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rcastanera.bsky.social
@rcastanera.bsky.social
35 followers 57 following 0 posts
Ramón y Cajal researcher at the Centre for Research in Agricultural Genomics (CRAG). Transposons and crop pangenomes
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Reposted
natecoevo.nature.com
Multi-omics analysis reveals that a 254-bp transposon induces defensive camouflage in an alpine plant and reduces herbivory by caterpillars of a specialist butterfly. Protective effects of this camouflage are reflected in the long-term dynamics of co-evolving plant and butterfly populations.
Genetic basis of camouflage in an alpine plant and its long-term co-evolution with an insect herbivore
Nature Ecology & Evolution - Multi-omics analysis reveals that a 254-bp transposon induces defensive camouflage in an alpine plant and reduces herbivory by caterpillars of a specialist...
rdcu.be
March 11, 2025 at 10:50 AM
Reposted
plantgenomics.bsky.social
LOCATE: using Long-read to Characterize All Transposable Elements
doi.org/10.1101/2025...

Mapping-based Genome Size Estimation
doi.org/10.1101/607390

#Genomics #Bioinformatics #OpenScience
LOCATE: using Long-read to Characterize All Transposable Elements
Transposons constitute ~45% of the human genome, driving gene evolution and contributing to disease, but their repetitive nature complicates the identification of new insertions. We present LOCATE (Lo...
doi.org
March 3, 2025 at 5:58 AM
Reposted
stephenturner.us
Combining DNA and protein alignments to improve genome annotation with LiftOn genome.cshlp.org/content/35/2... 🧬🖥️🧪 github.com/Kuanhao-Chao...
March 4, 2025 at 4:30 PM
Reposted
zoejolylopez.bsky.social
In @elife.bsky.social: Systems genomics of salinity stress response in rice doi.org/10.7554/eLif... !
Systems genomics of salinity stress response in rice
Insights into the molecular and genetic landscape underlying adaptive salinity stress responses in rice.
doi.org
February 21, 2025 at 12:31 AM
Reposted
metorrespadilla.bsky.social
Paper out !!🥳big thanks to all authors @marliesoomen.bsky.social @diego-rt.bsky.social @kaessmannlab.bsky.social @jonathangoeke.bsky.social @lorenzamottes.bsky.social & 'bluesky-less'

Lots of interesting new TE (& genes) biology

Data fully browsable💻 👉 embryo.helmholtz-munich.de/shiny_embryo/
February 21, 2025 at 3:50 PM
Reposted
johannconfais.bsky.social
REPET got a complete overhaul in version 4.0 ! Etienne Bardet from @urgi-inrae.bsky.social presents the updates in #PAG32
forgemia.inra.fr/urgi-anagen/...
January 13, 2025 at 8:59 PM