Tom Baden
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neurofishh.bsky.social
Tom Baden
@neurofishh.bsky.social
NeuroProf@Sussex, UK.
Vision, Evolution, Computation
Open Science
www.badenlab.org
Very excited about our new preprint, led by @gkafetzis.bsky.social /w @mikebok.bsky.social & @denilsson.bsky.social. We suggest that the vertebrate 'duplex' retina emerged from interconnecting two ancient median-eye microcircuits. Say goodbye to the 'simplex' retina - it probably never existed!
September 12, 2025 at 1:23 PM
Our proposal for a ‘universal’ nomenclature for rod and cone types based on their evolutionary lineages that will equally apply to all vertebrate species is now out! Have a look and please consider adopting the system :)
May 8, 2025 at 6:31 PM
Seeking input: A standardized nomenclature
for the rods and cones of the vertebrate retina

A number of us have been working on a proposal to bring various disconnected naming systems for the vertebrate rods and cones across species into alignment. The basic proposal looks like this:
February 5, 2025 at 3:34 PM
For today's #fluorescenceFriday, a transgenic Danionella cerebrum, the world's (second) smallest vertebrate (yep, "stout infantfish" are smaller, but no one has made them glow yet!). Picci by our very own @xinwei-wang.bsky.social
November 29, 2024 at 8:33 AM
Birds, reptiles and amphibians all still have it. What is the difference? Looks like the ancestors of mammals were much quicker to fully move to the land where the ancestral green/blue suppression was probably a bad thing, so they lost it.
November 20, 2024 at 9:31 AM
This is key: In the water, spectrally broad ‘white’ light only exists in the foreground. In the background, spectral interactions of light with water mean that the image becomes increasingly monochromatic (i.e. green/blue).
November 20, 2024 at 9:31 AM
The antagonistic input architecture to the fish eye can in fact already be seen without substantial manipulations: Fish have a massive ‘white bias’. Show them spectrally broad stimuli and their brain lights up like a Xmas tree. Show them ‘non-white stimuli’, and you get a greatly subdued response
November 20, 2024 at 9:31 AM
By contrast, if we kill red or UV cones, vision is not fine.
November 20, 2024 at 9:31 AM
In fact, if we kill green and blue cones, fish vision is fine. More than fine, in fact. It becomes less variable, because the green/blue system hangs in a delicate and mutually antagonistic balance.
November 20, 2024 at 9:31 AM
To do so, their outer retina is fundamentally set up to contrast the signals from the colour opponent green and blue cones (which are lost in mammals) from those of red and UV cones (which are retained).
November 20, 2024 at 9:31 AM
Nope! Not ancestrally. We show how that (zebra)fish, which retain the ‘original 4’ cones, ‘use colour information’ to auto-subtract the underwater background before the visual signal ever gets to the brain.
November 20, 2024 at 9:31 AM
Rods give greyscale vision, but cones are for colour, right?
November 20, 2024 at 9:31 AM
November 20, 2024 at 9:31 AM
a GCaMP tadpole for #fluorescenceFriday as an introductory hello on BlueSky :) Transgenic by Lora Sweeney (ISTA), and picci by our postdoc Michi Forsthofer
November 16, 2024 at 2:01 PM