neurodesk.org
@neurodesk.org
An open-source data analysis environment for reproducible neuroimaging: http://neurodesk.org @sbollmann.bsky.social
Reposted by neurodesk.org
Masson-Trottier et al. demonstrate how Neurodesk improves the transparency, portability, and sustainability of neuroimaging workflows: doi.org/10.52294/001...
@neurodesk.org @sbollmann.bsky.social
#FutureofPublishing #SpecialIssue
@neurodesk.org @sbollmann.bsky.social
#FutureofPublishing #SpecialIssue
September 19, 2025 at 2:49 PM
Masson-Trottier et al. demonstrate how Neurodesk improves the transparency, portability, and sustainability of neuroimaging workflows: doi.org/10.52294/001...
@neurodesk.org @sbollmann.bsky.social
#FutureofPublishing #SpecialIssue
@neurodesk.org @sbollmann.bsky.social
#FutureofPublishing #SpecialIssue
Fernanda Ribeiro kicking off OHBM in the educational session “Maximizing scientific efficiency through sustainability, reproducibility, and FAIRness” and showing how Neurodesk can help :)
June 23, 2025 at 11:43 PM
Fernanda Ribeiro kicking off OHBM in the educational session “Maximizing scientific efficiency through sustainability, reproducibility, and FAIRness” and showing how Neurodesk can help :)
Reposted by neurodesk.org
Day 3 of OHBM BrainHack going strong (this photo is from yesterday btw, repeat today anyone?) with HackTrack, TrainTrack, StatsWorkshop, and @neurodesk.org !
June 23, 2025 at 12:44 AM
Day 3 of OHBM BrainHack going strong (this photo is from yesterday btw, repeat today anyone?) with HackTrack, TrainTrack, StatsWorkshop, and @neurodesk.org !
Reposted by neurodesk.org
@neurodesk.org workshop at BrainHack #OHBM2025 is about to start 🙌🏽
June 21, 2025 at 1:18 AM
@neurodesk.org workshop at BrainHack #OHBM2025 is about to start 🙌🏽
Reposted by neurodesk.org
🧠 Join us at Brainhack 2025 in Brisbane!
We’re running a Neurodesk workshop on reproducible, portable neuroimaging workflows.
📅 21 June
🌐 Learn, hack, and contribute! 💻🌏
🔗 ohbm.github.io/hackathon202...
#Neurodesk #Brainhack2025 #Neuroimaging #OpenScience
We’re running a Neurodesk workshop on reproducible, portable neuroimaging workflows.
📅 21 June
🌐 Learn, hack, and contribute! 💻🌏
🔗 ohbm.github.io/hackathon202...
#Neurodesk #Brainhack2025 #Neuroimaging #OpenScience
June 10, 2025 at 9:28 PM
🧠 Join us at Brainhack 2025 in Brisbane!
We’re running a Neurodesk workshop on reproducible, portable neuroimaging workflows.
📅 21 June
🌐 Learn, hack, and contribute! 💻🌏
🔗 ohbm.github.io/hackathon202...
#Neurodesk #Brainhack2025 #Neuroimaging #OpenScience
We’re running a Neurodesk workshop on reproducible, portable neuroimaging workflows.
📅 21 June
🌐 Learn, hack, and contribute! 💻🌏
🔗 ohbm.github.io/hackathon202...
#Neurodesk #Brainhack2025 #Neuroimaging #OpenScience
Reposted by neurodesk.org
One of the exciting news for this year OHBM BrainHack is that we are bringing together like-minded events and joining up forces! @neurodesk.org will be there on June 21 for the Workshop, as well as the the 22nd with 23rd with two Hacking projects!
🧠 Join us at Brainhack 2025 in Brisbane!
We’re running a Neurodesk workshop on reproducible, portable neuroimaging workflows.
📅 21 June
🌐 Learn, hack, and contribute! 💻🌏
🔗 ohbm.github.io/hackathon202...
#Neurodesk #Brainhack2025 #Neuroimaging #OpenScience
We’re running a Neurodesk workshop on reproducible, portable neuroimaging workflows.
📅 21 June
🌐 Learn, hack, and contribute! 💻🌏
🔗 ohbm.github.io/hackathon202...
#Neurodesk #Brainhack2025 #Neuroimaging #OpenScience
June 11, 2025 at 12:06 PM
One of the exciting news for this year OHBM BrainHack is that we are bringing together like-minded events and joining up forces! @neurodesk.org will be there on June 21 for the Workshop, as well as the the 22nd with 23rd with two Hacking projects!
Reposted by neurodesk.org
🔁 Neurodesk helps you re-run old analyses — even years later — in exactly the same environment.
This is the power of portable reproducibility.
Try it out at our Brainhack workshop.
#Neuroimaging #Reproducibility #Brainhack2025
@neurodesk.org
This is the power of portable reproducibility.
Try it out at our Brainhack workshop.
#Neuroimaging #Reproducibility #Brainhack2025
@neurodesk.org
June 12, 2025 at 9:36 PM
🔁 Neurodesk helps you re-run old analyses — even years later — in exactly the same environment.
This is the power of portable reproducibility.
Try it out at our Brainhack workshop.
#Neuroimaging #Reproducibility #Brainhack2025
@neurodesk.org
This is the power of portable reproducibility.
Try it out at our Brainhack workshop.
#Neuroimaging #Reproducibility #Brainhack2025
@neurodesk.org
Reposted by neurodesk.org
“What if installing FSL or FreeSurfer didn’t take hours — or even minutes?”
Come find out how we’ve made neuroimaging tools portable, fast, and accessible for everyone at the Neurodesk workshop at Brainhack 2025.
#Neurodesk #Brainhack #OHBM2025
@neurodesk.org
Come find out how we’ve made neuroimaging tools portable, fast, and accessible for everyone at the Neurodesk workshop at Brainhack 2025.
#Neurodesk #Brainhack #OHBM2025
@neurodesk.org
June 12, 2025 at 9:42 PM
“What if installing FSL or FreeSurfer didn’t take hours — or even minutes?”
Come find out how we’ve made neuroimaging tools portable, fast, and accessible for everyone at the Neurodesk workshop at Brainhack 2025.
#Neurodesk #Brainhack #OHBM2025
@neurodesk.org
Come find out how we’ve made neuroimaging tools portable, fast, and accessible for everyone at the Neurodesk workshop at Brainhack 2025.
#Neurodesk #Brainhack #OHBM2025
@neurodesk.org
Please sign the petition to keep the Open Science Room at OHBM: chng.it/Yd8jd8Dz6L
Preserve the Open Science Room at the Organization for Human Brain Mapping Annual Meeting
Can you spare a minute to help this campaign?
chng.it
June 9, 2025 at 10:43 PM
Please sign the petition to keep the Open Science Room at OHBM: chng.it/Yd8jd8Dz6L
Reposted by neurodesk.org
🚨 BrainHack is BACK for #OHBM2025 🧠✨ In addition to the Hackathon, this year will feature two brand new workshops: how to use NeuroDesk; and how to use the latest neuroimaging statistics
📍The Precinct, Brisbane
📅June 21–23, 2025
Details in the link, sign up today!
ohbm.github.io/hackathon2025/
📍The Precinct, Brisbane
📅June 21–23, 2025
Details in the link, sign up today!
ohbm.github.io/hackathon2025/
OHBM Hackathon 2025
ohbm.github.io
June 2, 2025 at 5:52 AM
🚨 BrainHack is BACK for #OHBM2025 🧠✨ In addition to the Hackathon, this year will feature two brand new workshops: how to use NeuroDesk; and how to use the latest neuroimaging statistics
📍The Precinct, Brisbane
📅June 21–23, 2025
Details in the link, sign up today!
ohbm.github.io/hackathon2025/
📍The Precinct, Brisbane
📅June 21–23, 2025
Details in the link, sign up today!
ohbm.github.io/hackathon2025/
Reposted by neurodesk.org
Ready to take your #health and #medical #research to the next level? 🩺
Our suite of resources and tools includes:
💡 Training and educational materials
📊 Datasets
🔧 Tools: like @neurodesk.org & ARDC Nectar Research Cloud.
Explore the resources🔗 bit.ly/ardc-people-...
#TipTuesday
Our suite of resources and tools includes:
💡 Training and educational materials
📊 Datasets
🔧 Tools: like @neurodesk.org & ARDC Nectar Research Cloud.
Explore the resources🔗 bit.ly/ardc-people-...
#TipTuesday
May 6, 2025 at 6:17 AM
Ready to take your #health and #medical #research to the next level? 🩺
Our suite of resources and tools includes:
💡 Training and educational materials
📊 Datasets
🔧 Tools: like @neurodesk.org & ARDC Nectar Research Cloud.
Explore the resources🔗 bit.ly/ardc-people-...
#TipTuesday
Our suite of resources and tools includes:
💡 Training and educational materials
📊 Datasets
🔧 Tools: like @neurodesk.org & ARDC Nectar Research Cloud.
Explore the resources🔗 bit.ly/ardc-people-...
#TipTuesday
Neurodesk now integrates with Siemens OpenRecon :) Bring your image processing pipeline to the MRI scanner and accelerate clinical translation. This will be presented at ISMRM 2025 on Monday, 12th of May, 10am at the Siemens Booth, 4pm at poster 1962 and at the MAGNETOM User Meeting.
May 1, 2025 at 5:43 AM
Neurodesk now integrates with Siemens OpenRecon :) Bring your image processing pipeline to the MRI scanner and accelerate clinical translation. This will be presented at ISMRM 2025 on Monday, 12th of May, 10am at the Siemens Booth, 4pm at poster 1962 and at the MAGNETOM User Meeting.
Reposted by neurodesk.org
OHBM Brainhack 2025 – Register today! Exactly three months from now, we at OSSIG will bring you the OHBM Brainhack, and this time we will be joined by the @neurodesk.bsky.social and the Neuroimaging Statistics Workshops ! 🙂🧠 @ohbmofficial.bsky.social
March 22, 2025 at 11:32 AM
OHBM Brainhack 2025 – Register today! Exactly three months from now, we at OSSIG will bring you the OHBM Brainhack, and this time we will be joined by the @neurodesk.bsky.social and the Neuroimaging Statistics Workshops ! 🙂🧠 @ohbmofficial.bsky.social
Reposted by neurodesk.org
Check out the schedule of events linked with OHBM 2025
- Brain connectivity workshop, June 20-22
- Hackathon, June 21-23
- Neurodesk, June 21
- Brain gradients, June 23
- Precision network therapeutics, June 29
Register now!
We look forward to welcoming you to Brisbane!
@ohbmofficial.bsky.social
- Brain connectivity workshop, June 20-22
- Hackathon, June 21-23
- Neurodesk, June 21
- Brain gradients, June 23
- Precision network therapeutics, June 29
Register now!
We look forward to welcoming you to Brisbane!
@ohbmofficial.bsky.social
February 3, 2025 at 3:08 AM
Check out the schedule of events linked with OHBM 2025
- Brain connectivity workshop, June 20-22
- Hackathon, June 21-23
- Neurodesk, June 21
- Brain gradients, June 23
- Precision network therapeutics, June 29
Register now!
We look forward to welcoming you to Brisbane!
@ohbmofficial.bsky.social
- Brain connectivity workshop, June 20-22
- Hackathon, June 21-23
- Neurodesk, June 21
- Brain gradients, June 23
- Precision network therapeutics, June 29
Register now!
We look forward to welcoming you to Brisbane!
@ohbmofficial.bsky.social
The MRItogether 2024 videos are online :)
1. Neurodesk's development journey and lessons learned: www.youtube.com/watch?v=KJh_...
2. Neurodesk overview and live demo: www.youtube.com/watch?v=B7Gm...
3. how data can be converted into BIDS using Neurodesk: www.youtube.com/watch?v=uXrg...
1. Neurodesk's development journey and lessons learned: www.youtube.com/watch?v=KJh_...
2. Neurodesk overview and live demo: www.youtube.com/watch?v=B7Gm...
3. how data can be converted into BIDS using Neurodesk: www.youtube.com/watch?v=uXrg...
MRITogether2024-S3T3: Development journey of the Neurodesk platform
YouTube video by ESMRMB
www.youtube.com
January 24, 2025 at 12:10 AM
The MRItogether 2024 videos are online :)
1. Neurodesk's development journey and lessons learned: www.youtube.com/watch?v=KJh_...
2. Neurodesk overview and live demo: www.youtube.com/watch?v=B7Gm...
3. how data can be converted into BIDS using Neurodesk: www.youtube.com/watch?v=uXrg...
1. Neurodesk's development journey and lessons learned: www.youtube.com/watch?v=KJh_...
2. Neurodesk overview and live demo: www.youtube.com/watch?v=B7Gm...
3. how data can be converted into BIDS using Neurodesk: www.youtube.com/watch?v=uXrg...
We have a fully funded PhD position available, application deadline is 8th Jan 2025: study.uq.edu.au/study-option...
This project will develop methodologies and standards for defining reproducible, benchmarked analysis pipelines and integrating them in Neurodesk.org and Brainlife.io
This project will develop methodologies and standards for defining reproducible, benchmarked analysis pipelines and integrating them in Neurodesk.org and Brainlife.io
December 11, 2024 at 3:25 AM
We have a fully funded PhD position available, application deadline is 8th Jan 2025: study.uq.edu.au/study-option...
This project will develop methodologies and standards for defining reproducible, benchmarked analysis pipelines and integrating them in Neurodesk.org and Brainlife.io
This project will develop methodologies and standards for defining reproducible, benchmarked analysis pipelines and integrating them in Neurodesk.org and Brainlife.io
The latest episode of Andy Jahn's BrainCast covers how www.Neurodesk.org was developed, how it is currently used, and what its prospects are for making neuroimaging data analysis more accessible and reproducible. YouTube: www.youtube.com/watch?v=U_6_... Spotify: open.spotify.com/episode/57vT...
Neurodesk
Neurodesk
www.Neurodesk.org
December 2, 2024 at 11:22 PM
The latest episode of Andy Jahn's BrainCast covers how www.Neurodesk.org was developed, how it is currently used, and what its prospects are for making neuroimaging data analysis more accessible and reproducible. YouTube: www.youtube.com/watch?v=U_6_... Spotify: open.spotify.com/episode/57vT...
MRI together is on this week - December 3-6 2024 - A Global workshop on open, reproducible, and inclusive MR research! Registration: www.eventbrite.co.uk/e/mri-togeth... There will be 3 talks about Neurodesk on Wednesday and Thursday by Aswin Narayanan,
@sbollmann.bsky.social and Thuy Dao
@sbollmann.bsky.social and Thuy Dao
December 2, 2024 at 11:05 PM
MRI together is on this week - December 3-6 2024 - A Global workshop on open, reproducible, and inclusive MR research! Registration: www.eventbrite.co.uk/e/mri-togeth... There will be 3 talks about Neurodesk on Wednesday and Thursday by Aswin Narayanan,
@sbollmann.bsky.social and Thuy Dao
@sbollmann.bsky.social and Thuy Dao
Reposted by neurodesk.org
Let's create an #MRI researcher starter pack! There are a couple that are neuroimaging-based, but not really the method development community. I started putting together a few profiles, but please spread the word and tell me who else to add. If there is already one, let me know! go.bsky.app/EVqd6pe
November 19, 2024 at 10:41 AM
Let's create an #MRI researcher starter pack! There are a couple that are neuroimaging-based, but not really the method development community. I started putting together a few profiles, but please spread the word and tell me who else to add. If there is already one, let me know! go.bsky.app/EVqd6pe
Reposted by neurodesk.org
Are you tempted to orthogonalize the regressors in your fMRI model? @jeanette-mumford.bsky.social tells you why this is almost never a good idea, and is likely to wreck the interpretation of your model. mumfordbrainstats.tumblr.com/post/1337933...
Collinearity...is orthogonalization the answer? (No)
If I had a dollar for every time I read a paper purporting to have repaired a multicollinearity issue by orthogonalizing regressors... Unfortunately, once collinearity is there and the data have been...
mumfordbrainstats.tumblr.com
November 25, 2024 at 11:56 PM
Are you tempted to orthogonalize the regressors in your fMRI model? @jeanette-mumford.bsky.social tells you why this is almost never a good idea, and is likely to wreck the interpretation of your model. mumfordbrainstats.tumblr.com/post/1337933...
Reposted by neurodesk.org
Reposted by neurodesk.org
Very lucky to hear that our 3-year ARC Discovery Project "Towards Standards and Benchmarks for Reproducible Neuroimaging Research" was funded :) Planned outcomes include implementing and integrating processing standards with neuroimaging platforms like Neurodesk.org and Brainlife.io
November 27, 2024 at 4:19 AM
Very lucky to hear that our 3-year ARC Discovery Project "Towards Standards and Benchmarks for Reproducible Neuroimaging Research" was funded :) Planned outcomes include implementing and integrating processing standards with neuroimaging platforms like Neurodesk.org and Brainlife.io
Reposted by neurodesk.org
#MRITogether is around the corner, and here is more about our first 2 sessions 😍
Come join us and register here: mritogether.esmrmb.org/24m/registra...
Come join us and register here: mritogether.esmrmb.org/24m/registra...
November 27, 2024 at 7:44 AM
#MRITogether is around the corner, and here is more about our first 2 sessions 😍
Come join us and register here: mritogether.esmrmb.org/24m/registra...
Come join us and register here: mritogether.esmrmb.org/24m/registra...
Reposted by neurodesk.org
#MRITogether Day 2 (2/2) program is also full of excellent speakers, including my new supervisor @martinhebart.bsky.social 😆
Please join us in this free, fantastic event! Even if it is just to attend a session, make sure you register to access our webinar: mritogether.esmrmb.org/24m/registra...
Please join us in this free, fantastic event! Even if it is just to attend a session, make sure you register to access our webinar: mritogether.esmrmb.org/24m/registra...
November 28, 2024 at 8:09 PM
#MRITogether Day 2 (2/2) program is also full of excellent speakers, including my new supervisor @martinhebart.bsky.social 😆
Please join us in this free, fantastic event! Even if it is just to attend a session, make sure you register to access our webinar: mritogether.esmrmb.org/24m/registra...
Please join us in this free, fantastic event! Even if it is just to attend a session, make sure you register to access our webinar: mritogether.esmrmb.org/24m/registra...
Reposted by neurodesk.org
We created a #neuroinformagical (obvs) starter pack! Let us know who else to add!
#openscience #datasharing #neuroskyence 🧪
go.bsky.app/LRqnaMP
#openscience #datasharing #neuroskyence 🧪
go.bsky.app/LRqnaMP
November 19, 2024 at 8:44 PM
We created a #neuroinformagical (obvs) starter pack! Let us know who else to add!
#openscience #datasharing #neuroskyence 🧪
go.bsky.app/LRqnaMP
#openscience #datasharing #neuroskyence 🧪
go.bsky.app/LRqnaMP