Modernising Medical Microbiology
@modmedmicro.bsky.social
Modernising Medical Microbiology is a research unit within @ox.ac.uk aiming to transform how we analyse and treat infections, to improve patient care.
Reposted by Modernising Medical Microbiology
Are you interested in infections, the micro-organisms that cause them and antimicrobial resistance? So are @bashthebug.net and they're looking for new members to join their patient & public group. More info: bashthebug.net/lay-represen... Deadline 27 Nov @ouhospitals.bsky.social @medsci.ox.ac.uk
Bash The Bug (@BashTheBug) / X
Bash The Bug (@BashTheBug) / X
x.com
November 11, 2025 at 4:32 PM
Are you interested in infections, the micro-organisms that cause them and antimicrobial resistance? So are @bashthebug.net and they're looking for new members to join their patient & public group. More info: bashthebug.net/lay-represen... Deadline 27 Nov @ouhospitals.bsky.social @medsci.ox.ac.uk
Reposted by Modernising Medical Microbiology
New paper by @vbrunner.bsky.social looking at detecting rifampicin resistant subpopulations in M. tuberculosis infections using genetics and putting a lower limit on the proportion that arose due to secondary infections.
bit.ly/47rwf42
@modmedmicro.bsky.social
@oxfordbrc.bsky.social
bit.ly/47rwf42
@modmedmicro.bsky.social
@oxfordbrc.bsky.social
New paper: What can subpopulations tell us about rifampicin resistance?
Last Thursday this work which we'd previously preprinted looking at looking at rifampicin-resistant subpopulations in clinical M. tuberculosis samples was published in JAC-Antimicrobial Resistance. If...
bit.ly
October 17, 2025 at 7:24 AM
New paper by @vbrunner.bsky.social looking at detecting rifampicin resistant subpopulations in M. tuberculosis infections using genetics and putting a lower limit on the proportion that arose due to secondary infections.
bit.ly/47rwf42
@modmedmicro.bsky.social
@oxfordbrc.bsky.social
bit.ly/47rwf42
@modmedmicro.bsky.social
@oxfordbrc.bsky.social
Reposted by Modernising Medical Microbiology
🔔🔔Post-doc in microbial genomics with @modmedmicro.bsky.social🧬 - deadline tomorrow! Big genomic and clinical datasets to play with, friendly and very multidisciplinary team!
my.corehr.com/pls/uoxrecru...
my.corehr.com/pls/uoxrecru...
Job Details
my.corehr.com
October 15, 2025 at 10:58 AM
🔔🔔Post-doc in microbial genomics with @modmedmicro.bsky.social🧬 - deadline tomorrow! Big genomic and clinical datasets to play with, friendly and very multidisciplinary team!
my.corehr.com/pls/uoxrecru...
my.corehr.com/pls/uoxrecru...
Reposted by Modernising Medical Microbiology
Our recent paper on rifampicin resistant subpopulations in M. tuberculosis (M. tb) has been published at JAC-antimicrobial resistance.
I am really happy to see this work published just hours before submitting my DPhil thesis! 🔗👇
doi.org/10.1093/jaca...
I am really happy to see this work published just hours before submitting my DPhil thesis! 🔗👇
doi.org/10.1093/jaca...
Subpopulations in clinical samples of M. tuberculosis can give rise to rifampicin resistance and shed light on how resistance is acquired
AbstractObjectives. WGS has become a key tool for diagnosing Mycobacterium tuberculosis infections, but discrepancies between genotypic and phenotypic drug
doi.org
October 13, 2025 at 4:40 PM
Our recent paper on rifampicin resistant subpopulations in M. tuberculosis (M. tb) has been published at JAC-antimicrobial resistance.
I am really happy to see this work published just hours before submitting my DPhil thesis! 🔗👇
doi.org/10.1093/jaca...
I am really happy to see this work published just hours before submitting my DPhil thesis! 🔗👇
doi.org/10.1093/jaca...
Reposted by Modernising Medical Microbiology
We have a fully funded PhD studentship available @modmedmicro.bsky.social in Oxford to work on a really cool project looking at population heterogeneity in bloodstream infections www.ndm.ox.ac.uk/study/dphil-... Please spread the word/get in touch if you'd like to chat.
DPhil project themes
www.ndm.ox.ac.uk
October 8, 2025 at 7:11 PM
We have a fully funded PhD studentship available @modmedmicro.bsky.social in Oxford to work on a really cool project looking at population heterogeneity in bloodstream infections www.ndm.ox.ac.uk/study/dphil-... Please spread the word/get in touch if you'd like to chat.
Reposted by Modernising Medical Microbiology
Now published in @natcomms.nature.com 🎉
www.nature.com/articles/s41...
With Gillian Rodger, @nstoesser.bsky.social, @samlipworth.bsky.social, @stat-sarah.bsky.social, and many others!
www.nature.com/articles/s41...
With Gillian Rodger, @nstoesser.bsky.social, @samlipworth.bsky.social, @stat-sarah.bsky.social, and many others!
September 30, 2025 at 4:21 PM
Now published in @natcomms.nature.com 🎉
www.nature.com/articles/s41...
With Gillian Rodger, @nstoesser.bsky.social, @samlipworth.bsky.social, @stat-sarah.bsky.social, and many others!
www.nature.com/articles/s41...
With Gillian Rodger, @nstoesser.bsky.social, @samlipworth.bsky.social, @stat-sarah.bsky.social, and many others!
Reposted by Modernising Medical Microbiology
🧪 ♻️ Want to make lab and computational research more sustainable? Check out our Oxford Climate Society blog post:
oxfordclimatesociety.com/blog/from-pi...
Shout out to Green Team colleagues @modmedmicro.bsky.social for helping! #LEAFAward #GreenDiSC #GreenImpact #SustainableScience
oxfordclimatesociety.com/blog/from-pi...
Shout out to Green Team colleagues @modmedmicro.bsky.social for helping! #LEAFAward #GreenDiSC #GreenImpact #SustainableScience
September 30, 2025 at 5:00 PM
🧪 ♻️ Want to make lab and computational research more sustainable? Check out our Oxford Climate Society blog post:
oxfordclimatesociety.com/blog/from-pi...
Shout out to Green Team colleagues @modmedmicro.bsky.social for helping! #LEAFAward #GreenDiSC #GreenImpact #SustainableScience
oxfordclimatesociety.com/blog/from-pi...
Shout out to Green Team colleagues @modmedmicro.bsky.social for helping! #LEAFAward #GreenDiSC #GreenImpact #SustainableScience
From Pipettes to Pipelines: Greening a Multidisciplinary Research Lab.
@dotnagy.bsky.social writes about the experiences from the Modernising Medical Microbiology (MMM) research group on engaging wet lab, computer lab, and office teams on the #sustainability agenda.
#GreenLab #SustainableScience
@dotnagy.bsky.social writes about the experiences from the Modernising Medical Microbiology (MMM) research group on engaging wet lab, computer lab, and office teams on the #sustainability agenda.
#GreenLab #SustainableScience
From Pipettes to Pipelines — Oxford Climate Society
Dorottya Nagy writes about the experiences from the Modernising Medical Microbiology (MMM) Unit research group on engaging wet lab, computer lab, and office teams on the sustainability agenda.
oxfordclimatesociety.com
September 30, 2025 at 4:46 PM
From Pipettes to Pipelines: Greening a Multidisciplinary Research Lab.
@dotnagy.bsky.social writes about the experiences from the Modernising Medical Microbiology (MMM) research group on engaging wet lab, computer lab, and office teams on the #sustainability agenda.
#GreenLab #SustainableScience
@dotnagy.bsky.social writes about the experiences from the Modernising Medical Microbiology (MMM) research group on engaging wet lab, computer lab, and office teams on the #sustainability agenda.
#GreenLab #SustainableScience
Reposted by Modernising Medical Microbiology
Great new work from #DotNagy @modmedmicro.bsky.social - she tool 96 clinical isolates from the NEKSUS study and sequenced with both Illumina and Nanopore - question was, can we do away with hybrid sequencing for the rest of the study?
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
Nanopore long-read only genome assembly of clinical Enterobacterales isolates is complete and accurate
Whole bacterial genome sequence reconstruction using Oxford Nanopore Technologies ('Nanopore') long-read only sequencing may offer a lower-cost, higher-throughput alternative for pathogen surveillance...
www.biorxiv.org
September 18, 2025 at 11:38 AM
Great new work from #DotNagy @modmedmicro.bsky.social - she tool 96 clinical isolates from the NEKSUS study and sequenced with both Illumina and Nanopore - question was, can we do away with hybrid sequencing for the rest of the study?
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
Reposted by Modernising Medical Microbiology
Pleased to see this pre-printed, highlighting the completeness/accuracy of @nanoporetech.com long-read genome assembly for clinical Enterobacterales: www.biorxiv.org/content/10.1...
Thanks to colleagues @modmedmicro.bsky.social, @ukhsa.bsky.social, @genewiz.bsky.social and @oxfordbrc.bsky.social!
Thanks to colleagues @modmedmicro.bsky.social, @ukhsa.bsky.social, @genewiz.bsky.social and @oxfordbrc.bsky.social!
September 25, 2025 at 8:48 AM
Pleased to see this pre-printed, highlighting the completeness/accuracy of @nanoporetech.com long-read genome assembly for clinical Enterobacterales: www.biorxiv.org/content/10.1...
Thanks to colleagues @modmedmicro.bsky.social, @ukhsa.bsky.social, @genewiz.bsky.social and @oxfordbrc.bsky.social!
Thanks to colleagues @modmedmicro.bsky.social, @ukhsa.bsky.social, @genewiz.bsky.social and @oxfordbrc.bsky.social!
Reposted by Modernising Medical Microbiology
Come and work with Nicole Stoesser and I in Oxford with the fantastic team @modmedmicro.bsky.social - great opportunity for a postdoc in microbial genomics to do some creative research with great datasets as part of our HPRU.
my.corehr.com/pls/uoxrecru...
my.corehr.com/pls/uoxrecru...
Job Details
my.corehr.com
September 23, 2025 at 9:47 AM
Come and work with Nicole Stoesser and I in Oxford with the fantastic team @modmedmicro.bsky.social - great opportunity for a postdoc in microbial genomics to do some creative research with great datasets as part of our HPRU.
my.corehr.com/pls/uoxrecru...
my.corehr.com/pls/uoxrecru...
Reposted by Modernising Medical Microbiology
Great new opportunity to work with #Liamshaw and @mutantbug.bsky.social as part of our HPRU collaboration (www.expmedndm.ox.ac.uk/research/hpr...) - sinks, phages, wastewater genomes, novel threat detection bit.ly/45Wcv6I - deadline 14th Sept 👀
Details | Working at Bristol | University of Bristol
bit.ly
September 1, 2025 at 7:23 PM
Great new opportunity to work with #Liamshaw and @mutantbug.bsky.social as part of our HPRU collaboration (www.expmedndm.ox.ac.uk/research/hpr...) - sinks, phages, wastewater genomes, novel threat detection bit.ly/45Wcv6I - deadline 14th Sept 👀
'Linking life expectancy to the bacteria in our gut: A final year undergraduate project'.
Akika investigated how the gut microbiome influences longevity, with fieldwork in Nagano, Japan—home to the country’s longest-living population.
Read the blog post here ➡️
bashthebug.net/2025/08/22/l...
Akika investigated how the gut microbiome influences longevity, with fieldwork in Nagano, Japan—home to the country’s longest-living population.
Read the blog post here ➡️
bashthebug.net/2025/08/22/l...
Linking life expectancy to the bacteria in our gut: A final year undergraduate project
My name is Akika Altman-Chandler, and I just graduated from the University of Oxford with a degree in Human Sciences. For my undergraduate dissertation, I worked with Teresa Street at the Modernisi…
bashthebug.net
August 22, 2025 at 2:20 PM
'Linking life expectancy to the bacteria in our gut: A final year undergraduate project'.
Akika investigated how the gut microbiome influences longevity, with fieldwork in Nagano, Japan—home to the country’s longest-living population.
Read the blog post here ➡️
bashthebug.net/2025/08/22/l...
Akika investigated how the gut microbiome influences longevity, with fieldwork in Nagano, Japan—home to the country’s longest-living population.
Read the blog post here ➡️
bashthebug.net/2025/08/22/l...
Reposted by Modernising Medical Microbiology
More evidence to support best practice "water-safe" care in healthcare facilities is urgently needed. If you're interested please tap into the @hisinfection.bsky.social Wastewater and AMR Special Interest Collaborative (SPARC) - see you there!
Wastewater and AMR Special Interest Collaborative (SPARC)
www.his.org.uk
July 26, 2025 at 9:47 AM
More evidence to support best practice "water-safe" care in healthcare facilities is urgently needed. If you're interested please tap into the @hisinfection.bsky.social Wastewater and AMR Special Interest Collaborative (SPARC) - see you there!
Reposted by Modernising Medical Microbiology
More discussion about the JHI study with @emrsa15.bsky.social in the Infection Control Matters podcast series infectioncontrolmatters.com/2025/04/02/t...
The Sinkbug Survey: Antibiotics, AMR, Chemicals and Plumbing
In this episode of Infection Control Matters, Martin Kiernan speaks with Dr. Nicole Stoesser about a large-scale, multi-centre study exploring the role of hospital sink infrastructure in antimicrob…
infectioncontrolmatters.com
July 26, 2025 at 9:47 AM
More discussion about the JHI study with @emrsa15.bsky.social in the Infection Control Matters podcast series infectioncontrolmatters.com/2025/04/02/t...
Reposted by Modernising Medical Microbiology
This builds on the SinkBug group's earlier work in @thejhi.bsky.social www.journalofhospitalinfection.com/article/S019... where we showed that sink infrastructure in hospitals was common, highly varied, and that antibiotics were detected in a third of sink-traps.
Survey of healthcare-associated sink infrastructure, and sink trap antibiotic residues and biochemistry, in twenty-nine UK hospitals
Hospital sinks are linked to healthcare-associated infections. Antibiotics and chemicals
in sink traps can select for pathogens and antimicrobial resistance (AMR). Optimizing
sink design and usage can...
www.journalofhospitalinfection.com
July 26, 2025 at 9:47 AM
This builds on the SinkBug group's earlier work in @thejhi.bsky.social www.journalofhospitalinfection.com/article/S019... where we showed that sink infrastructure in hospitals was common, highly varied, and that antibiotics were detected in a third of sink-traps.
Reposted by Modernising Medical Microbiology
New analysis from Kevin Chau @modmedmicro.bsky.social for the SinkBug Consortium (a collaboration with teams across 29 UK hospitals, NITCAR, UKHSA): Pathogen and AMR gene burden in 287 hospital sink-trap metagenomes and factors associated with high burdens.
The hospital Sink-ome: Pathogen and antimicrobial resistance gene burden in sink-traps across 29 UK hospitals and associations with sink characteristics https://www.medrxiv.org/content/10.1101/2025.07.25.25332191v1
July 26, 2025 at 9:47 AM
New analysis from Kevin Chau @modmedmicro.bsky.social for the SinkBug Consortium (a collaboration with teams across 29 UK hospitals, NITCAR, UKHSA): Pathogen and AMR gene burden in 287 hospital sink-trap metagenomes and factors associated with high burdens.
Reposted by Modernising Medical Microbiology
Participate at our global conference on Antimicrobial Resistance🧬
🗓️ 23-25 March 2026 #AMR2026
Join a community at the vanguard of #AMR genomics, to explore how big data and innovative technologies are driving solutions to tackle this health crisis.
📎Abstracts welcome: bit.ly/3SWzJUm
#MicroSky
🗓️ 23-25 March 2026 #AMR2026
Join a community at the vanguard of #AMR genomics, to explore how big data and innovative technologies are driving solutions to tackle this health crisis.
📎Abstracts welcome: bit.ly/3SWzJUm
#MicroSky
July 22, 2025 at 7:00 AM
Bit over 24 hours left to apply for these two posts to help us develop pipelines to process pathogens..!
Senior Bioinformatic Engineer
bit.ly/4ecl0hF
Senior Biostatistical Researcher
bit.ly/4kRfZxI
Grade 8 or 7, depending on experience
closing date: noon Tues 8 July
Senior Bioinformatic Engineer
bit.ly/4ecl0hF
Senior Biostatistical Researcher
bit.ly/4kRfZxI
Grade 8 or 7, depending on experience
closing date: noon Tues 8 July
Job Details
bit.ly
July 7, 2025 at 10:39 AM
Bit over 24 hours left to apply for these two posts to help us develop pipelines to process pathogens..!
Senior Bioinformatic Engineer
bit.ly/4ecl0hF
Senior Biostatistical Researcher
bit.ly/4kRfZxI
Grade 8 or 7, depending on experience
closing date: noon Tues 8 July
Senior Bioinformatic Engineer
bit.ly/4ecl0hF
Senior Biostatistical Researcher
bit.ly/4kRfZxI
Grade 8 or 7, depending on experience
closing date: noon Tues 8 July
Reposted by Modernising Medical Microbiology
Job advert to come and work with me on tuberculosis closes tomorrow (Friday) at noon!
Part of #OxCOD4TB
bit.ly/4ndKOhF
@ndm.ox.ac.uk @modmedmicro.bsky.social
@oxfordbrc.bsky.social
Part of #OxCOD4TB
bit.ly/4ndKOhF
@ndm.ox.ac.uk @modmedmicro.bsky.social
@oxfordbrc.bsky.social
Job Details
bit.ly
July 3, 2025 at 1:33 PM
Job advert to come and work with me on tuberculosis closes tomorrow (Friday) at noon!
Part of #OxCOD4TB
bit.ly/4ndKOhF
@ndm.ox.ac.uk @modmedmicro.bsky.social
@oxfordbrc.bsky.social
Part of #OxCOD4TB
bit.ly/4ndKOhF
@ndm.ox.ac.uk @modmedmicro.bsky.social
@oxfordbrc.bsky.social
Come and work with us!
Senior Biostatistical Researcher bit.ly/4kRfZxI
Senior Bioinformatic Engineer bit.ly/4ecl0hF
both Grade 8 or 7, closing noon Tue 8 Jul
Computational Mycobacteriologist
Grade 7, closing noon Fri 4 Jul bit.ly/4ndKOhF
@medsci.ox.ac.uk
@oxfordbrc.bsky.social
@ndm.ox.ac.uk
Senior Biostatistical Researcher bit.ly/4kRfZxI
Senior Bioinformatic Engineer bit.ly/4ecl0hF
both Grade 8 or 7, closing noon Tue 8 Jul
Computational Mycobacteriologist
Grade 7, closing noon Fri 4 Jul bit.ly/4ndKOhF
@medsci.ox.ac.uk
@oxfordbrc.bsky.social
@ndm.ox.ac.uk
Job Details
bit.ly
July 1, 2025 at 7:24 AM
Come and work with us!
Senior Biostatistical Researcher bit.ly/4kRfZxI
Senior Bioinformatic Engineer bit.ly/4ecl0hF
both Grade 8 or 7, closing noon Tue 8 Jul
Computational Mycobacteriologist
Grade 7, closing noon Fri 4 Jul bit.ly/4ndKOhF
@medsci.ox.ac.uk
@oxfordbrc.bsky.social
@ndm.ox.ac.uk
Senior Biostatistical Researcher bit.ly/4kRfZxI
Senior Bioinformatic Engineer bit.ly/4ecl0hF
both Grade 8 or 7, closing noon Tue 8 Jul
Computational Mycobacteriologist
Grade 7, closing noon Fri 4 Jul bit.ly/4ndKOhF
@medsci.ox.ac.uk
@oxfordbrc.bsky.social
@ndm.ox.ac.uk
Three posts all closing next week!
Senior Biostatistical Researcher bit.ly/4kRfZxI
Senior Bioinformatic Engineer bit.ly/4ecl0hF
both Grade 8 or 7, closing noon Wed 2 Jul
Computational Mycobacteriologist
Grade 7, closing noon Fri 4 Jul bit.ly/4ndKOhF
@medsci.ox.ac.uk
Senior Biostatistical Researcher bit.ly/4kRfZxI
Senior Bioinformatic Engineer bit.ly/4ecl0hF
both Grade 8 or 7, closing noon Wed 2 Jul
Computational Mycobacteriologist
Grade 7, closing noon Fri 4 Jul bit.ly/4ndKOhF
@medsci.ox.ac.uk
Job Details
bit.ly
June 27, 2025 at 8:32 AM
Three posts all closing next week!
Senior Biostatistical Researcher bit.ly/4kRfZxI
Senior Bioinformatic Engineer bit.ly/4ecl0hF
both Grade 8 or 7, closing noon Wed 2 Jul
Computational Mycobacteriologist
Grade 7, closing noon Fri 4 Jul bit.ly/4ndKOhF
@medsci.ox.ac.uk
Senior Biostatistical Researcher bit.ly/4kRfZxI
Senior Bioinformatic Engineer bit.ly/4ecl0hF
both Grade 8 or 7, closing noon Wed 2 Jul
Computational Mycobacteriologist
Grade 7, closing noon Fri 4 Jul bit.ly/4ndKOhF
@medsci.ox.ac.uk
Reposted by Modernising Medical Microbiology
Come and work with me and use the 53,897 samples of M. tuberculosis we have collated to help tackle this important disease!
We are part of the OxCoD4TB consortium that is developing new therapeutics for tuberculosis.
Grade 7, funding until 28 Feb 2028, deadline noon Fri 4 July
bit.ly/4ndKOhF
We are part of the OxCoD4TB consortium that is developing new therapeutics for tuberculosis.
Grade 7, funding until 28 Feb 2028, deadline noon Fri 4 July
bit.ly/4ndKOhF
Job Details
bit.ly
June 25, 2025 at 8:37 AM
Come and work with me and use the 53,897 samples of M. tuberculosis we have collated to help tackle this important disease!
We are part of the OxCoD4TB consortium that is developing new therapeutics for tuberculosis.
Grade 7, funding until 28 Feb 2028, deadline noon Fri 4 July
bit.ly/4ndKOhF
We are part of the OxCoD4TB consortium that is developing new therapeutics for tuberculosis.
Grade 7, funding until 28 Feb 2028, deadline noon Fri 4 July
bit.ly/4ndKOhF
Reposted by Modernising Medical Microbiology
June 23, 2025 at 11:28 AM
Just like buses, here is a third role we are advertising for!
Come and help @philipwfowler.bsky.social use the large TB datasets we hold to help the OxCoD4TB consortium develop new therapeutics for tuberculosis.
Grade 7, funding until 28 Feb 2028, deadline noon Fri 4 July
bit.ly/4ndKOhF
Come and help @philipwfowler.bsky.social use the large TB datasets we hold to help the OxCoD4TB consortium develop new therapeutics for tuberculosis.
Grade 7, funding until 28 Feb 2028, deadline noon Fri 4 July
bit.ly/4ndKOhF
Job Details
bit.ly
June 23, 2025 at 11:01 AM
Just like buses, here is a third role we are advertising for!
Come and help @philipwfowler.bsky.social use the large TB datasets we hold to help the OxCoD4TB consortium develop new therapeutics for tuberculosis.
Grade 7, funding until 28 Feb 2028, deadline noon Fri 4 July
bit.ly/4ndKOhF
Come and help @philipwfowler.bsky.social use the large TB datasets we hold to help the OxCoD4TB consortium develop new therapeutics for tuberculosis.
Grade 7, funding until 28 Feb 2028, deadline noon Fri 4 July
bit.ly/4ndKOhF