Mohamed Abuelanin 🦖
@mabuelanin.bsky.social
Postdoc in Megan Dennis Lab at UC Davis. Ph.D. in Computer Science. Specializing in developing computational methods for massive-scale multi-omics data processing, integration and analysis. DIB-Lab alum, #bioinformatics https://mr-eyes.com
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Excited to share our final accepted version of the CiFi method out today: www.nature.com/articles/s41...
December 8, 2025 at 6:45 PM
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I watched a video titled “Why Smart People Struggle to Succeed” and the ideas were surprisingly accurate. Here is the breakdown:
December 8, 2025 at 5:47 AM
I watched a video titled “Why Smart People Struggle to Succeed” and the ideas were surprisingly accurate. Here is the breakdown:
Morning dew turned my windshield into a perfect pattern of glassy bubbles!
October 29, 2025 at 7:35 PM
Morning dew turned my windshield into a perfect pattern of glassy bubbles!
Reposted by Mohamed Abuelanin 🦖
I did not expect to find a paper in a new graph genotyper (using colored de bruijn graphs) which quotes Maya Angelou on line 1!
academic.oup.com/gigascience/...
academic.oup.com/gigascience/...
October 7, 2025 at 8:53 PM
I did not expect to find a paper in a new graph genotyper (using colored de bruijn graphs) which quotes Maya Angelou on line 1!
academic.oup.com/gigascience/...
academic.oup.com/gigascience/...
Reposted by Mohamed Abuelanin 🦖
A new paper from the lab! Work led by
@drtamermansour.bsky.social and others not here on bsky. "We propose the Great Genotyper, a population-scale genotyping workflow to address the N+1 problem."
@drtamermansour.bsky.social and others not here on bsky. "We propose the Great Genotyper, a population-scale genotyping workflow to address the N+1 problem."
The Great Genotyper: a graph-based method for population genotyping of small and structural variants
Long-read sequencing (LRS) enables high-quality structural variant (SV) discovery. SV genotypers utilize these precise call sets to improve the recall and precision of genotyping in short-read sequenc...
pmc.ncbi.nlm.nih.gov
October 7, 2025 at 8:32 PM
A new paper from the lab! Work led by
@drtamermansour.bsky.social and others not here on bsky. "We propose the Great Genotyper, a population-scale genotyping workflow to address the N+1 problem."
@drtamermansour.bsky.social and others not here on bsky. "We propose the Great Genotyper, a population-scale genotyping workflow to address the N+1 problem."
For decades, NIH funding has fueled breakthroughs in cancer, heart disease and more. But a new policy puts progress at risk. We need Congress to oppose this abrupt change. Join me in emailing lawmakers today! #SaveNIHresearch bit.ly/4hxmfsK
Protect research funding
Federal funding for biomedical research is under threat.
bit.ly
February 21, 2025 at 7:29 PM
For decades, NIH funding has fueled breakthroughs in cancer, heart disease and more. But a new policy puts progress at risk. We need Congress to oppose this abrupt change. Join me in emailing lawmakers today! #SaveNIHresearch bit.ly/4hxmfsK
Reposted by Mohamed Abuelanin 🦖
not paying indirect costs for research is like only paying the players in the Super Bowl.
can't have a Super Bowl without coaches, referees, security, janitors, announcers, stadium staff, and a stadium - and you can't have research without supporting people and facilities
can't have a Super Bowl without coaches, referees, security, janitors, announcers, stadium staff, and a stadium - and you can't have research without supporting people and facilities
February 9, 2025 at 11:00 PM
not paying indirect costs for research is like only paying the players in the Super Bowl.
can't have a Super Bowl without coaches, referees, security, janitors, announcers, stadium staff, and a stadium - and you can't have research without supporting people and facilities
can't have a Super Bowl without coaches, referees, security, janitors, announcers, stadium staff, and a stadium - and you can't have research without supporting people and facilities
Reposted by Mohamed Abuelanin 🦖
🚨 Keynotes at RECOMB-seq 2025! 🚨
🌟 Alicia Oshlack – computational transcriptomics
@aliciao.bsky.social
🌟 Rayan Chikhi – sequencing data structures
@rayanchikhi.bsky.social
🗓️ Dates: April 24–25, 2025
📍 Seoul, South Korea
recomb-seq.github.io/speakers/
🌟 Alicia Oshlack – computational transcriptomics
@aliciao.bsky.social
🌟 Rayan Chikhi – sequencing data structures
@rayanchikhi.bsky.social
🗓️ Dates: April 24–25, 2025
📍 Seoul, South Korea
recomb-seq.github.io/speakers/
January 24, 2025 at 10:32 AM
🚨 Keynotes at RECOMB-seq 2025! 🚨
🌟 Alicia Oshlack – computational transcriptomics
@aliciao.bsky.social
🌟 Rayan Chikhi – sequencing data structures
@rayanchikhi.bsky.social
🗓️ Dates: April 24–25, 2025
📍 Seoul, South Korea
recomb-seq.github.io/speakers/
🌟 Alicia Oshlack – computational transcriptomics
@aliciao.bsky.social
🌟 Rayan Chikhi – sequencing data structures
@rayanchikhi.bsky.social
🗓️ Dates: April 24–25, 2025
📍 Seoul, South Korea
recomb-seq.github.io/speakers/
Reposted by Mohamed Abuelanin 🦖
American science and medicine has been thrown into chaos and uncertainty over the past week. Here are some stories to get up to speed. 1/12
January 28, 2025 at 3:58 AM
American science and medicine has been thrown into chaos and uncertainty over the past week. Here are some stories to get up to speed. 1/12
Reposted by Mohamed Abuelanin 🦖
If you’re in the US and you’d like to know what projects and vital services federal grants currently fund in your state, you can search here: www.usaspending.gov
And you can find the contact information for your elected representatives here: www.usa.gov/elected-offi...
They need to hear from you.
And you can find the contact information for your elected representatives here: www.usa.gov/elected-offi...
They need to hear from you.
USAspending.gov
www.usaspending.gov
January 28, 2025 at 4:59 AM
If you’re in the US and you’d like to know what projects and vital services federal grants currently fund in your state, you can search here: www.usaspending.gov
And you can find the contact information for your elected representatives here: www.usa.gov/elected-offi...
They need to hear from you.
And you can find the contact information for your elected representatives here: www.usa.gov/elected-offi...
They need to hear from you.
Significant performance improvement in de-hashing sourmash signatures. Looking for 100k hash in 1.4B Reads using 32-cores took 2:30hrs and 95MB RAM.
GitHub - mr-eyes/sourmash_plugin_dehash: Dehash sourmash signatures
Dehash sourmash signatures. Contribute to mr-eyes/sourmash_plugin_dehash development by creating an account on GitHub.
github.com
November 27, 2024 at 1:27 AM
Significant performance improvement in de-hashing sourmash signatures. Looking for 100k hash in 1.4B Reads using 32-cores took 2:30hrs and 95MB RAM.
Wow! I Am not sure they were waiting for permission, tho.
Woman’s Ancestry DNA kit identifies cold case victim, leading to her grandma’s arrest
A suspect in the ‘Baby Garnet’ case has been found 27 years later, thanks to one woman’s Ancestry DNA results
www.independent.co.uk
November 24, 2024 at 6:34 PM
Wow! I Am not sure they were waiting for permission, tho.
I couldn't be more thrilled to be part of this amazing lab!
Hello bluesky friends! I'm excited to introduce myself. I go by (mee-gun) and am a proud #firstgen college grad that grew up in the midwest. My lab @UCDavis studies genetic drivers of human traits, evolution, and diseases, with an emphasis on neurodevelopment and complex variation. 1/10 (buckle up)
November 19, 2024 at 7:35 AM
I couldn't be more thrilled to be part of this amazing lab!
Reposted by Mohamed Abuelanin 🦖
I'm delighted to release the first half of my new textbook in human genetics:
web.stanford.edu/group/pritch...
"An Owner's Guide to the Human Genome: an introduction to human population genetics, variation and disease"
web.stanford.edu/group/pritch...
"An Owner's Guide to the Human Genome: an introduction to human population genetics, variation and disease"
An Owner's Guide to the Human Genome
An Owner's Guide to the Human Genome
web.stanford.edu
October 1, 2023 at 10:53 PM
I'm delighted to release the first half of my new textbook in human genetics:
web.stanford.edu/group/pritch...
"An Owner's Guide to the Human Genome: an introduction to human population genetics, variation and disease"
web.stanford.edu/group/pritch...
"An Owner's Guide to the Human Genome: an introduction to human population genetics, variation and disease"
It was an extraordinary meeting full of exciting talks and interesting research!
T2T-F2F 2024 is a wrap! Great to hear about the new discoveries being enabled by complete genomes, and to meet so many new, enthusiastic T2T’ers. Thanks for the great meeting @khmiga.bsky.social @ucscgenomics.bsky.social !! 🎉
September 6, 2024 at 4:58 AM
It was an extraordinary meeting full of exciting talks and interesting research!
ChatGPT has acquired a new procrastination skill.
September 1, 2024 at 12:43 AM
ChatGPT has acquired a new procrastination skill.
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Where the patterns are: repetition-aware compression for colored de Bruijn graphs https://www.biorxiv.org/content/10.1101/2024.07.09.602727v1
Where the patterns are: repetition-aware compression for colored de Bruijn graphs https://www.biorxiv.org/content/10.1101/2024.07.09.602727v1
We describe lossless compressed data structures for the colored de Bruijn graph (or, c-dBG). Given a
www.biorxiv.org
July 14, 2024 at 8:06 AM
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The Great Genotyper: A Graph-Based Method for Population Genotyping of Small and Structural Variants https://www.medrxiv.org/content/10.1101/2024.07.04.24309921v1
The Great Genotyper: A Graph-Based Method for Population Genotyping of Small and Structural Variants https://www.medrxiv.org/content/10.1101/2024.07.04.24309921v1
Long-read sequencing (LRS) enables variant calling of high-quality structural variants (SVs). Genoty
www.medrxiv.org
July 5, 2024 at 5:30 PM
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I am pleased to announce that I am joining the Dennis Lab as a postdoc. Very excited to be working with @mydennis.bsky.social!
June 30, 2024 at 2:54 AM
I am pleased to announce that I am joining the Dennis Lab as a postdoc. Very excited to be working with @mydennis.bsky.social!
Phasing millions of samples achieves near perfect accuracy, enabling parent-of-origin classification of variants https://www.biorxiv.org/content/10.1101/2024.05.06.592816v1
Phasing millions of samples achieves near perfect accuracy, enabling parent-of-origin classification of variants https://www.biorxiv.org/content/10.1101/2024.05.06.592816v1
Haplotype phasing, the process of determining which genetic variants are physically located on the s
www.biorxiv.org
May 12, 2024 at 7:08 AM
Reposted by Mohamed Abuelanin 🦖
UC Davis students begin protest against genocide in Palestine www.sacbee.com/news/local/a... (good for them!)
Admin emails saying they are actively working with protestors and "UC Davis cannot and will not discipline students for speech protected by the First Amendment." (good for them too!)
Admin emails saying they are actively working with protestors and "UC Davis cannot and will not discipline students for speech protected by the First Amendment." (good for them too!)
www.sacbee.com
May 7, 2024 at 4:03 AM
UC Davis students begin protest against genocide in Palestine www.sacbee.com/news/local/a... (good for them!)
Admin emails saying they are actively working with protestors and "UC Davis cannot and will not discipline students for speech protected by the First Amendment." (good for them too!)
Admin emails saying they are actively working with protestors and "UC Davis cannot and will not discipline students for speech protected by the First Amendment." (good for them too!)
I cannot overstate how incredible this documentary series is.
Mammals (TV Mini Series 2024) ⭐ 8.7 | Documentary
58m
www.imdb.com
May 7, 2024 at 1:01 AM
I cannot overstate how incredible this documentary series is.