Ludo Poiré
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ludopoire.bsky.social
Ludo Poiré
@ludopoire.bsky.social
PhD Student working on plasmid dynamics in Acinetobacter baumannii.

Team Horizontal Gene Transfer in pathogenic bacteria 🦠 (CIRI, Lyon 🇫🇷)
Reposted by Ludo Poiré
Bacterial networks #BacNet26 in September 2026 will be chaired by @lalouxlab.bsky.social and co-chaired by @s-lab.bsky.social with @coralietesseur.bsky.social

Sneak peak on invited speakers and preliminary program:
meetings.embo.org/event/26-bac...
November 20, 2025 at 8:47 AM
Reposted by Ludo Poiré
Hot off the press! Our latest paper led by @fernpizza.bsky.social, understanding how plasmids evolve inside cells. These small, self-replicating DNA circles live inside bacteria and carry antibiotic resistance genes, but also compete with one another to replicate. 1/
www.science.org/doi/10.1126/...
Intracellular competition shapes plasmid population dynamics
From populations of multicellular organisms to selfish genetic elements, conflicts between levels of biological organization are central to evolution. Plasmids are extrachromosomal, self-replicating g...
www.science.org
November 20, 2025 at 9:42 PM
Reposted by Ludo Poiré
Happy to see our paper out!

Functional assessment of anti-phage defence systems in their native clinical E. coli host
royalsocietypublishing.org/doi/10.1098/...

Thread in previous post 👇
September 5, 2025 at 10:44 AM
Reposted by Ludo Poiré
Super excited to receive the ERC starting grant to explore what phage-bacteria interactions can teach us on host-pathogen conflicts 🤩 I'm immensely grateful to my wonderful team and to present and past mentors 🙏
📣 The ERC Starting Grant call results are out!

Find out which early-career researchers will receive funding this year, what they will be investigating, where they will be based... plus lots of other #ERCStG facts & figures for 2025!

➡️ buff.ly/IsafuFh

#FrontierResearch 🇪🇺#EUfunded #HorizonEurope
September 4, 2025 at 11:40 AM
Reposted by Ludo Poiré
NEW Review from @soreklab.bsky.social @dinahoch.bsky.social explains how immune pathways manipulate the availability of nucleotides, chemically modify nucleotides to generate immune signalling molecules, and produce altered nucleotides that poison viral replication
#immunosky #microsky #phagesky
Manipulation of the nucleotide pool in human, bacterial and plant immunity - Nature Reviews Immunology
Modification of the nucleotide pool is emerging as key to innate immunity in animals, plants and bacteria. This Review explains how immune pathways conserved from bacteria to humans manipulate the nuc...
www.nature.com
July 29, 2025 at 2:52 PM
Reposted by Ludo Poiré
Preprint below has been a long time coming, here just in time for #microbio25 ! (if the train wifi lets me)
With @andrewmatthews.bsky.social
#MicroSky
🧵
Stealth plasmids: rapid evolution of deleted plasmids can displace antibiotic resistance plasmids under selection for horizontal transmission. https://www.biorxiv.org/content/10.1101/2025.03.30.646151v1
March 31, 2025 at 1:10 PM
Reposted by Ludo Poiré
When things add up: environmental structure and microbial interactions drive antibiotic-resistance plasmid evolution.

New paper from the lab, and the third chapter of Lars Zandbergen’s thesis!

www.biorxiv.org/cgi/content/...
When things add up: environmental structure and microbial interactions drive antibiotic-resistance plasmid evolution
Antimicrobial resistance is recognized as a major global health threat. Pathogens can rapidly evolve resistance which diminishes the impact of antimicrobial treatments. The presence of other microbes ...
www.biorxiv.org
May 8, 2025 at 9:36 AM
Reposted by Ludo Poiré
Reposted by Ludo Poiré
Do plasmids evolve faster 🐇, slower 🐢, or just like chromosomes 🧬?

In our new paper, we tackled this question using theory, simulations, bioinformatics, and experiments!

👇 Check out all the details in Paula’s thread!

Hint: 🐇 (most of the time)
July 22, 2025 at 3:05 PM
Reposted by Ludo Poiré
Hi Friends,
Thought I'd kick off my posts on #MEvoSky with a short love letter to my favorite genetic element, the Himar1 mariner transposon! I'll go over some key literature and my plans for this intrepid mariner in my own microbial evolution research.

🧵 1/13
February 1, 2025 at 9:29 PM
Reposted by Ludo Poiré
Our global meta-analysis of changes in genetic diversity across the entire tree of life indicates pervasive loss of intraspecific diversity, but there is a glimmer of hope: conservation actions and management interventions can indeed make a difference. 👇
January 29, 2025 at 5:23 PM
Reposted by Ludo Poiré
It’s out! Brand new work from my PostDoc in @themaxwelllab.bsky.social exploring anti-phage defence in V. parahaemolyticus: Integrons are anti-phage defence libraries in Vibrio parahaemolyticus
rdcu.be/d7EsN
Integrons are anti-phage defence libraries in Vibrio parahaemolyticus
Nature Microbiology - Integrons are genetic elements that capture and store gene cassettes in Vibrio species. Bioinformatic and molecular techniques show that these regions can be hotspots of phage...
rdcu.be
January 27, 2025 at 3:48 PM
Reposted by Ludo Poiré
Phage defense and genome editing using novel retrons sourced from isolated environmental bacteria https://www.biorxiv.org/content/10.1101/2025.01.29.635429v1
January 30, 2025 at 2:18 AM