LongTREC
@longtrec.bsky.social
Long-TREC: The Long-Reads Transcriptomics European Consortium. Next-generation transcriptome biology revealed by single-molecule sequencing technologies
The #LongTREC consortium is well represented at #BioHackathon Europe in Berlin! Advancing open-source tools to accelerate innovation — perfectly aligned with our own goals more specifically in #LongReadTranscriptomics. Congratulations to all who took part! @anaconesa.bsky.social
November 5, 2025 at 2:21 PM
The #LongTREC consortium is well represented at #BioHackathon Europe in Berlin! Advancing open-source tools to accelerate innovation — perfectly aligned with our own goals more specifically in #LongReadTranscriptomics. Congratulations to all who took part! @anaconesa.bsky.social
We’re thrilled to announce the first symposium dedicated to #LongReadsTranscriptomics, taking place in Valencia, Spain!
More information available at: 👉 longtrec.eu/VALT/
Meet the #LongReadsTranscriptomics community, connect with experts, and explore the latest advances in this research area.
More information available at: 👉 longtrec.eu/VALT/
Meet the #LongReadsTranscriptomics community, connect with experts, and explore the latest advances in this research area.
October 27, 2025 at 11:15 AM
We’re thrilled to announce the first symposium dedicated to #LongReadsTranscriptomics, taking place in Valencia, Spain!
More information available at: 👉 longtrec.eu/VALT/
Meet the #LongReadsTranscriptomics community, connect with experts, and explore the latest advances in this research area.
More information available at: 👉 longtrec.eu/VALT/
Meet the #LongReadsTranscriptomics community, connect with experts, and explore the latest advances in this research area.
One week on, and we're still processing an amazing week at #ISMBECCB2025. We have learned so much and have been inspired by others to have some great ideas. One thing is undeniable - the future of computational biology is very bright!
August 1, 2025 at 8:19 AM
One week on, and we're still processing an amazing week at #ISMBECCB2025. We have learned so much and have been inspired by others to have some great ideas. One thing is undeniable - the future of computational biology is very bright!
Dont miss your second chance to catch all our #LongTREC posters on day 4 of #ISMBECCB2025 ! Also, dont miss an exciting talk by
@tianyuanliu.bsky.social - "Transcriptome Universal Single-isoform Control (TUSCO) A framework for evaluating transcriptome quality." 15:40–15:50 Track iRNA · Room 02N
@tianyuanliu.bsky.social - "Transcriptome Universal Single-isoform Control (TUSCO) A framework for evaluating transcriptome quality." 15:40–15:50 Track iRNA · Room 02N
July 24, 2025 at 10:37 AM
Dont miss your second chance to catch all our #LongTREC posters on day 4 of #ISMBECCB2025 ! Also, dont miss an exciting talk by
@tianyuanliu.bsky.social - "Transcriptome Universal Single-isoform Control (TUSCO) A framework for evaluating transcriptome quality." 15:40–15:50 Track iRNA · Room 02N
@tianyuanliu.bsky.social - "Transcriptome Universal Single-isoform Control (TUSCO) A framework for evaluating transcriptome quality." 15:40–15:50 Track iRNA · Room 02N
Dont miss our #Longtrec posters today at #ISMBECCB2025! Also, make sure to get to room 02N, the iRNA track for Leda Katopodis' exciting talk - "Charting the tRNAome in health and disease with AMaNITA" #tRNA #RNAMods #Epitranscriptome
We're looking forward to meeting you!!
We're looking forward to meeting you!!
July 23, 2025 at 7:20 AM
Dont miss our #Longtrec posters today at #ISMBECCB2025! Also, make sure to get to room 02N, the iRNA track for Leda Katopodis' exciting talk - "Charting the tRNAome in health and disease with AMaNITA" #tRNA #RNAMods #Epitranscriptome
We're looking forward to meeting you!!
We're looking forward to meeting you!!
We at #LongTREC are super excited for day 2 of #ISMBECCB2025! We are also very excited about our posters and talks this Wednesday and Thursday. Download this flyer to make it easy to catch up on all the latest long-read transcriptomics research. #LongReadTranscriptomics
July 22, 2025 at 7:41 AM
We at #LongTREC are super excited for day 2 of #ISMBECCB2025! We are also very excited about our posters and talks this Wednesday and Thursday. Download this flyer to make it easy to catch up on all the latest long-read transcriptomics research. #LongReadTranscriptomics
Dont miss any of our #LongTREC communications at #ISMBECCB2025. Download this flyer to make catching all the latest & hottest long-read transcriptomics research simple.
@anaconesa.bsky.social
@anaconesa.bsky.social
July 21, 2025 at 12:30 PM
Dont miss any of our #LongTREC communications at #ISMBECCB2025. Download this flyer to make catching all the latest & hottest long-read transcriptomics research simple.
@anaconesa.bsky.social
@anaconesa.bsky.social
What a Week!! A nice summary of our Summer School in #LongReadsTranscriptomics at the @earlhaminst.bsky.social
Our Doctoral Candidates have delivered outstanding training sessions on a wide range of scientific topics, and the response has been incredible!
#SustainableResearch #SummerSchool
Our Doctoral Candidates have delivered outstanding training sessions on a wide range of scientific topics, and the response has been incredible!
#SustainableResearch #SummerSchool
July 18, 2025 at 3:42 PM
What a Week!! A nice summary of our Summer School in #LongReadsTranscriptomics at the @earlhaminst.bsky.social
Our Doctoral Candidates have delivered outstanding training sessions on a wide range of scientific topics, and the response has been incredible!
#SustainableResearch #SummerSchool
Our Doctoral Candidates have delivered outstanding training sessions on a wide range of scientific topics, and the response has been incredible!
#SustainableResearch #SummerSchool
We couldn't end the #LongTREC Summer School without talking about #SustainableResearch
We have (at least tried) to raise awareness about the impact of our travel. No surprise that the most sustainable of all travellers were our LongTREC cyclists!
@anaconesa.bsky.social
We have (at least tried) to raise awareness about the impact of our travel. No surprise that the most sustainable of all travellers were our LongTREC cyclists!
@anaconesa.bsky.social
July 18, 2025 at 9:08 AM
We couldn't end the #LongTREC Summer School without talking about #SustainableResearch
We have (at least tried) to raise awareness about the impact of our travel. No surprise that the most sustainable of all travellers were our LongTREC cyclists!
@anaconesa.bsky.social
We have (at least tried) to raise awareness about the impact of our travel. No surprise that the most sustainable of all travellers were our LongTREC cyclists!
@anaconesa.bsky.social
We finalise our #LongTREC Summer school in #LongReadsTranscriptomics with a fantastic presentation from @lafucarmen.bsky.social from Genoscope - Centre National de Séquençage, who is covering the field of #metatranscriptomics
July 17, 2025 at 3:30 PM
We finalise our #LongTREC Summer school in #LongReadsTranscriptomics with a fantastic presentation from @lafucarmen.bsky.social from Genoscope - Centre National de Séquençage, who is covering the field of #metatranscriptomics
Day 4 of the #LongTREC #SummerSchool has started! This morning, @eamonmc.bsky.social and Juan Francisco Cervilla Martínez will cover Single-cell transcriptomics with #LongReads
#LongReadsTranscriptomics #SingleCellTranscriptomics
#LongReadsTranscriptomics #SingleCellTranscriptomics
July 17, 2025 at 10:27 AM
Day 4 of the #LongTREC #SummerSchool has started! This morning, @eamonmc.bsky.social and Juan Francisco Cervilla Martínez will cover Single-cell transcriptomics with #LongReads
#LongReadsTranscriptomics #SingleCellTranscriptomics
#LongReadsTranscriptomics #SingleCellTranscriptomics
The final session of day 3 of our #LongTREC summer school. Leda Katopodi talks all things epitranscriptomics. She covers detection of RNA modifications, differential analysis, biological implications and more!
#Epitranscriptomics #RNAModifications #TransferRNA #tRNA
#Epitranscriptomics #RNAModifications #TransferRNA #tRNA
July 16, 2025 at 3:32 PM
The final session of day 3 of our #LongTREC summer school. Leda Katopodi talks all things epitranscriptomics. She covers detection of RNA modifications, differential analysis, biological implications and more!
#Epitranscriptomics #RNAModifications #TransferRNA #tRNA
#Epitranscriptomics #RNAModifications #TransferRNA #tRNA
Day 3 of the #LongTREC Summerschool continues with a session on Allele-specific Expression from Nadja Nolte and Pablo Angulo Lara. Our students get up to date with Haplotype assembly, read mapping to haplotype resolved assemblies, Haplotype-specific quantification, ASE testing and more!
July 16, 2025 at 1:45 PM
Day 3 of the #LongTREC Summerschool continues with a session on Allele-specific Expression from Nadja Nolte and Pablo Angulo Lara. Our students get up to date with Haplotype assembly, read mapping to haplotype resolved assemblies, Haplotype-specific quantification, ASE testing and more!
After the great presentations from @fabianjetzinger.bsky.social and @anaconesa.bsky.social, it's hands-on practical time for our students, and #tappAS is on the menu!
#LongReadsTranscriptomics #LongTREC #Bioinformatics #DifferentialIsoformUsage #FunctionalAnalysis
#LongReadsTranscriptomics #LongTREC #Bioinformatics #DifferentialIsoformUsage #FunctionalAnalysis
July 16, 2025 at 10:29 AM
After the great presentations from @fabianjetzinger.bsky.social and @anaconesa.bsky.social, it's hands-on practical time for our students, and #tappAS is on the menu!
#LongReadsTranscriptomics #LongTREC #Bioinformatics #DifferentialIsoformUsage #FunctionalAnalysis
#LongReadsTranscriptomics #LongTREC #Bioinformatics #DifferentialIsoformUsage #FunctionalAnalysis
We start Day 3 with @fabianjetzinger.bsky.social from BioBam Bioinformatics.
#LongReadsTranscriptomics #LongTREC #Bioinformatics #TranscriptomeReconstruction
#LongReadsTranscriptomics #LongTREC #Bioinformatics #TranscriptomeReconstruction
July 16, 2025 at 9:07 AM
We start Day 3 with @fabianjetzinger.bsky.social from BioBam Bioinformatics.
#LongReadsTranscriptomics #LongTREC #Bioinformatics #TranscriptomeReconstruction
#LongReadsTranscriptomics #LongTREC #Bioinformatics #TranscriptomeReconstruction
Fabio Zanarello has a goal in his session: explain how #LongReads sequencing is integrated in the non-model genome annotation workflow.
#LongReadsTranscriptomics #LongTREC #GenomeAnnotation #Bioinformatics #EarthBioGenomeProject
#LongReadsTranscriptomics #LongTREC #GenomeAnnotation #Bioinformatics #EarthBioGenomeProject
July 15, 2025 at 12:48 PM
Fabio Zanarello has a goal in his session: explain how #LongReads sequencing is integrated in the non-model genome annotation workflow.
#LongReadsTranscriptomics #LongTREC #GenomeAnnotation #Bioinformatics #EarthBioGenomeProject
#LongReadsTranscriptomics #LongTREC #GenomeAnnotation #Bioinformatics #EarthBioGenomeProject
After the coffee break ☕, the session continues for hands-on practice 👩💻 with #SQANTI3 @fabianjetzinger.bsky.social
July 15, 2025 at 12:45 PM
After the coffee break ☕, the session continues for hands-on practice 👩💻 with #SQANTI3 @fabianjetzinger.bsky.social
Day 2 starts!! @fabianjetzinger.bsky.social and Yalan Bi provide an overview of challenges associated with transcript identification. Our participants learn about the discovery of known and novel transcript isoforms, as well as QC of transcriptomes using tools such as #IsoTools and #SQANTI3
July 15, 2025 at 8:40 AM
Day 2 starts!! @fabianjetzinger.bsky.social and Yalan Bi provide an overview of challenges associated with transcript identification. Our participants learn about the discovery of known and novel transcript isoforms, as well as QC of transcriptomes using tools such as #IsoTools and #SQANTI3
🌎🗣️ First day at the LongTREC #SummerSchool @earlhaminst.bsky.social and the energy is already incredible!
It’s amazing to see how quickly meaningful connections are forming. Scientific progress doesn’t happen in isolation — it’s built through collaboration, shared knowledge, and open dialogue.
It’s amazing to see how quickly meaningful connections are forming. Scientific progress doesn’t happen in isolation — it’s built through collaboration, shared knowledge, and open dialogue.
July 14, 2025 at 2:55 PM
🌎🗣️ First day at the LongTREC #SummerSchool @earlhaminst.bsky.social and the energy is already incredible!
It’s amazing to see how quickly meaningful connections are forming. Scientific progress doesn’t happen in isolation — it’s built through collaboration, shared knowledge, and open dialogue.
It’s amazing to see how quickly meaningful connections are forming. Scientific progress doesn’t happen in isolation — it’s built through collaboration, shared knowledge, and open dialogue.
Day 1 of our #SummerSchool : @carolinamonzo.bsky.social , Satrio Wibowo, Mahmud Sami Aydin and @tianyuanliu.bsky.social introducing participants to #LongReads sequencing technologies, how to design #lrRNAseq experiments, library preparation strategies for #lrRNAseq, mapping, QC and more!
July 14, 2025 at 1:24 PM
Day 1 of our #SummerSchool : @carolinamonzo.bsky.social , Satrio Wibowo, Mahmud Sami Aydin and @tianyuanliu.bsky.social introducing participants to #LongReads sequencing technologies, how to design #lrRNAseq experiments, library preparation strategies for #lrRNAseq, mapping, QC and more!
📣 We have kicked off at the Earlham Institute, and everyone is to learn all about #LongReadsTranscriptomics at our #LongTREC Summer School.
Starting with an introduction of our network from @anaconesa.bsky.social and a quick getting to know our participants - both trainers and trainees!
Starting with an introduction of our network from @anaconesa.bsky.social and a quick getting to know our participants - both trainers and trainees!
July 14, 2025 at 9:03 AM
📣 We have kicked off at the Earlham Institute, and everyone is to learn all about #LongReadsTranscriptomics at our #LongTREC Summer School.
Starting with an introduction of our network from @anaconesa.bsky.social and a quick getting to know our participants - both trainers and trainees!
Starting with an introduction of our network from @anaconesa.bsky.social and a quick getting to know our participants - both trainers and trainees!
A brief summary of the #LongCyclingForFuture bike trip that our LongTREC bikers have made from London to Norwich, passing via Cambridge. Join us to congratulate them on this adventure while raising awareness of the carbon footprint impact of scientific travel.
@anaconesa.bsky.social
@anaconesa.bsky.social
July 13, 2025 at 9:55 PM
A brief summary of the #LongCyclingForFuture bike trip that our LongTREC bikers have made from London to Norwich, passing via Cambridge. Join us to congratulate them on this adventure while raising awareness of the carbon footprint impact of scientific travel.
@anaconesa.bsky.social
@anaconesa.bsky.social
🎥 The LongTREC video Continues: Juan Francisco Cervilla Martínez! Juan Francisco is a Doctoral Candidate at the @earlhaminst.bsky.social , working under the supervision of Wilfried Haerty. His research focuses on long-read single-cell transcriptomics to uncover Isoform usage within single cells.
July 13, 2025 at 9:48 PM
🎥 The LongTREC video Continues: Juan Francisco Cervilla Martínez! Juan Francisco is a Doctoral Candidate at the @earlhaminst.bsky.social , working under the supervision of Wilfried Haerty. His research focuses on long-read single-cell transcriptomics to uncover Isoform usage within single cells.
Next up in our LongTREC video series is Leda Katopodi!
Leda is doing exciting research at @crg.eu, working with
@evamarianovoa.bsky.social
to explore the role of epitranscriptomic modifications of #tRNAs in cancer and beyond!
#CancerResearch #tRNAs #RNAMods #Epitranscriptomics
Leda is doing exciting research at @crg.eu, working with
@evamarianovoa.bsky.social
to explore the role of epitranscriptomic modifications of #tRNAs in cancer and beyond!
#CancerResearch #tRNAs #RNAMods #Epitranscriptomics
July 13, 2025 at 4:00 PM
Next up in our LongTREC video series is Leda Katopodi!
Leda is doing exciting research at @crg.eu, working with
@evamarianovoa.bsky.social
to explore the role of epitranscriptomic modifications of #tRNAs in cancer and beyond!
#CancerResearch #tRNAs #RNAMods #Epitranscriptomics
Leda is doing exciting research at @crg.eu, working with
@evamarianovoa.bsky.social
to explore the role of epitranscriptomic modifications of #tRNAs in cancer and beyond!
#CancerResearch #tRNAs #RNAMods #Epitranscriptomics
📽️ Next in the LongTREC Series: Tianyuan Liu!
tianyuanliu.bsky.social is a Doctoral Candidate at @i2sysbio.es under the supervision of @anaconesa.bsky.social He explains the question he wants to answer: "How does the exact chromatin landscape at a promoter decide which RNA isoform is made?"
tianyuanliu.bsky.social is a Doctoral Candidate at @i2sysbio.es under the supervision of @anaconesa.bsky.social He explains the question he wants to answer: "How does the exact chromatin landscape at a promoter decide which RNA isoform is made?"
July 13, 2025 at 3:51 PM
📽️ Next in the LongTREC Series: Tianyuan Liu!
tianyuanliu.bsky.social is a Doctoral Candidate at @i2sysbio.es under the supervision of @anaconesa.bsky.social He explains the question he wants to answer: "How does the exact chromatin landscape at a promoter decide which RNA isoform is made?"
tianyuanliu.bsky.social is a Doctoral Candidate at @i2sysbio.es under the supervision of @anaconesa.bsky.social He explains the question he wants to answer: "How does the exact chromatin landscape at a promoter decide which RNA isoform is made?"