Karel "CaCO3" Berka
@krapnik.bsky.social
theoretical physical chemist, molecular modeller and chem- and bioinformatician - #AlphaFoldology enthusiast
Palacky University Olomouc, ORCID:0000-0001-9472-2589 #boardgamegeek (tweets my own) #ELIXIRCZ
Palacky University Olomouc, ORCID:0000-0001-9472-2589 #boardgamegeek (tweets my own) #ELIXIRCZ
this fake Nobel one is good as well
October 6, 2025 at 5:35 PM
this fake Nobel one is good as well
Today’s addition is also good
#JournalofImmaterialResearch
#JournalofImmaterialResearch
October 6, 2025 at 5:04 PM
Today’s addition is also good
#JournalofImmaterialResearch
#JournalofImmaterialResearch
K dnešnímu vystoupení ve Studiu 6 na @ceskatelevize.cz jsem si přichystal #3Dprint pomůcku - model bakteriofága phiX174, jenž posloužil @arcinstitute.org k přípravě nových bakteriofágů proti rezistentním kmenům E. coli
September 25, 2025 at 1:22 PM
K dnešnímu vystoupení ve Studiu 6 na @ceskatelevize.cz jsem si přichystal #3Dprint pomůcku - model bakteriofága phiX174, jenž posloužil @arcinstitute.org k přípravě nových bakteriofágů proti rezistentním kmenům E. coli
September 16, 2025 at 4:48 PM
and here is a picture of the event from my students ;)
June 18, 2025 at 5:18 PM
and here is a picture of the event from my students ;)
On personal #Alphafoldology notice - I’ve got my Professorship in Biomolecular Chemistry and Structural Biology today.
June 16, 2025 at 2:13 PM
On personal #Alphafoldology notice - I’ve got my Professorship in Biomolecular Chemistry and Structural Biology today.
#ELIXIRAHM 2025 in Thessaloniki started with bold vision
June 2, 2025 at 11:34 AM
#ELIXIRAHM 2025 in Thessaloniki started with bold vision
when I print something small - it prints well, slower print also seemed to help with the lower parts of the model, but then I got this:
May 24, 2025 at 7:56 PM
when I print something small - it prints well, slower print also seemed to help with the lower parts of the model, but then I got this:
I got weird #3Dmissprint on @prusa3d.com MK3.9 when printing 3D periodic tables from PLA (no supports needed)
I got one printer head stuck with filament all over and on the second I was able to stop the print when this weird behavior occured:
I got one printer head stuck with filament all over and on the second I was able to stop the print when this weird behavior occured:
May 24, 2025 at 7:54 PM
I got weird #3Dmissprint on @prusa3d.com MK3.9 when printing 3D periodic tables from PLA (no supports needed)
I got one printer head stuck with filament all over and on the second I was able to stop the print when this weird behavior occured:
I got one printer head stuck with filament all over and on the second I was able to stop the print when this weird behavior occured:
veril jsem cambridge dictionary…
May 10, 2025 at 1:18 PM
veril jsem cambridge dictionary…
V Kutné hoře dnes ráno nebyla ani noha…
April 21, 2025 at 1:48 PM
V Kutné hoře dnes ráno nebyla ani noha…
… and finally it is time to leave Telč and head back home. Good luck everyone and I hope to meet next time!
March 28, 2025 at 4:15 PM
… and finally it is time to leave Telč and head back home. Good luck everyone and I hope to meet next time!
and the last lecture has Sahra Setenay Baran from IBT CAS on Improved validation and refinement of biomolecular structures using B-factors analysis
March 28, 2025 at 11:18 AM
and the last lecture has Sahra Setenay Baran from IBT CAS on Improved validation and refinement of biomolecular structures using B-factors analysis
and we continue with Pavel Kohout from the same lab on how to use autoencoder latent spaces for protein evolution and design
March 28, 2025 at 10:54 AM
and we continue with Pavel Kohout from the same lab on how to use autoencoder latent spaces for protein evolution and design
you can try the successor prediction tool at following QR links:
March 28, 2025 at 10:51 AM
you can try the successor prediction tool at following QR links:
now we switch to design of enhanced proteins through protein evolution anticipation by Monika Rosinská from Loschmidt laboratories MUNI
March 28, 2025 at 10:39 AM
now we switch to design of enhanced proteins through protein evolution anticipation by Monika Rosinská from Loschmidt laboratories MUNI
after coffee break we continue with Gugliemo Tadeshi from @vschtpraha.bsky.social on enhancing MD sampling with adversatial autoencoder
March 28, 2025 at 10:27 AM
after coffee break we continue with Gugliemo Tadeshi from @vschtpraha.bsky.social on enhancing MD sampling with adversatial autoencoder
followed by David Příhoda from @vschtpraha.bsky.social and MSD Prague on humanized antibody design using language models
March 28, 2025 at 9:32 AM
followed by David Příhoda from @vschtpraha.bsky.social and MSD Prague on humanized antibody design using language models
last two student sections of 1st @elixircz.bsky.social PhD conference starts with Aleksandra Ivanova from Pavel Polishchuk group at IMTM UPOL with StreaMD
March 28, 2025 at 9:11 AM
last two student sections of 1st @elixircz.bsky.social PhD conference starts with Aleksandra Ivanova from Pavel Polishchuk group at IMTM UPOL with StreaMD
and finish with with take home message that “your time for research does not scale, Galaxy does”
March 28, 2025 at 8:55 AM
and finish with with take home message that “your time for research does not scale, Galaxy does”
he mentions Galaxy Training Academy global event in 12-18 May
March 28, 2025 at 8:52 AM
he mentions Galaxy Training Academy global event in 12-18 May
he shows Czech usage of Galaxy
March 28, 2025 at 8:49 AM
he shows Czech usage of Galaxy