Julien Tap
@julientap.bsky.social
food and gut #microbionaut | #microbiota #microbiome | research scientist
@INRAE_France
| https://fme.micalis.fr
@INRAE_France
| https://fme.micalis.fr
Reposted by Julien Tap
📢 [𝐍𝐞𝐰 𝐩𝐮𝐛𝐥𝐢𝐜𝐚𝐭𝐢𝐨𝐧] 𝐀𝐧𝐭𝐢𝐛𝐢𝐨𝐭𝐢𝐜𝐬 𝐚𝐧𝐝 𝐦𝐢𝐜𝐫𝐨𝐛𝐢𝐨𝐭𝐚: 𝐩𝐡𝐚𝐠𝐞𝐬, 𝐚𝐥𝐥𝐢𝐞𝐬 𝐨𝐟 𝐫𝐞𝐬𝐢𝐥𝐢𝐞𝐧𝐜𝐞.
@metagenopolis.bsky.social @inrae-france.bsky.social with @inserm.fr @institutpasteur.bsky.social
#microbiome #science #antibiotics #phages #research #health
@eugenpfeifer.bsky.social
www.cell.com/cell-reports...
@metagenopolis.bsky.social @inrae-france.bsky.social with @inserm.fr @institutpasteur.bsky.social
#microbiome #science #antibiotics #phages #research #health
@eugenpfeifer.bsky.social
www.cell.com/cell-reports...
Antibiotic perturbation of the human gut phageome preserves its individuality and promotes blooms of virulent phages
Antibiotic-induced disruption of the gut microbiome leads to a transient loss of microbiome
diversity (bacterial and viral) and causes blooms of bacteria and their viruses. Our
analysis suggests that ...
www.cell.com
October 22, 2025 at 12:30 PM
📢 [𝐍𝐞𝐰 𝐩𝐮𝐛𝐥𝐢𝐜𝐚𝐭𝐢𝐨𝐧] 𝐀𝐧𝐭𝐢𝐛𝐢𝐨𝐭𝐢𝐜𝐬 𝐚𝐧𝐝 𝐦𝐢𝐜𝐫𝐨𝐛𝐢𝐨𝐭𝐚: 𝐩𝐡𝐚𝐠𝐞𝐬, 𝐚𝐥𝐥𝐢𝐞𝐬 𝐨𝐟 𝐫𝐞𝐬𝐢𝐥𝐢𝐞𝐧𝐜𝐞.
@metagenopolis.bsky.social @inrae-france.bsky.social with @inserm.fr @institutpasteur.bsky.social
#microbiome #science #antibiotics #phages #research #health
@eugenpfeifer.bsky.social
www.cell.com/cell-reports...
@metagenopolis.bsky.social @inrae-france.bsky.social with @inserm.fr @institutpasteur.bsky.social
#microbiome #science #antibiotics #phages #research #health
@eugenpfeifer.bsky.social
www.cell.com/cell-reports...
Reposted by Julien Tap
New publication🧬 𝐌𝐞𝐭𝐞𝐨𝐫𝟐 𝐢𝐬 𝐚𝐧 𝐨𝐩𝐞𝐧-𝐬𝐨𝐮𝐫𝐜𝐞 𝐭𝐨𝐨𝐥 𝐟𝐨𝐫 𝐭𝐚𝐱𝐨𝐧𝐨𝐦𝐢𝐜, 𝐟𝐮𝐧𝐜𝐭𝐢𝐨𝐧𝐚𝐥, 𝐚𝐧𝐝 𝐬𝐭𝐫𝐚𝐢𝐧-𝐥𝐞𝐯𝐞𝐥 𝐩𝐫𝐨𝐟𝐢𝐥𝐢𝐧𝐠 𝐨𝐟 𝐦𝐞𝐭𝐚𝐠𝐞𝐧𝐨𝐦𝐢𝐜 𝐬𝐚𝐦𝐩𝐥𝐞𝐬. 𝐟𝐨𝐫 𝐦𝐢𝐜𝐫𝐨𝐛𝐢𝐨𝐦𝐞 𝐫𝐞𝐬𝐞𝐚𝐫𝐜𝐡
microbiomejournal.biomedcentral.com/articles/10....
#metagenomic #science #data #lefrenchgut
@inrae-france.bsky.social @institutpasteur.bsky.social
microbiomejournal.biomedcentral.com/articles/10....
#metagenomic #science #data #lefrenchgut
@inrae-france.bsky.social @institutpasteur.bsky.social
Accurate profiling of microbial communities for shotgun metagenomic sequencing with Meteor2 - Microbiome
Background The characterization of complex microbial communities is a critical challenge in microbiome research, as it is essential for understanding the intricate relationships between microorganisms...
microbiomejournal.biomedcentral.com
November 6, 2025 at 4:38 PM
New publication🧬 𝐌𝐞𝐭𝐞𝐨𝐫𝟐 𝐢𝐬 𝐚𝐧 𝐨𝐩𝐞𝐧-𝐬𝐨𝐮𝐫𝐜𝐞 𝐭𝐨𝐨𝐥 𝐟𝐨𝐫 𝐭𝐚𝐱𝐨𝐧𝐨𝐦𝐢𝐜, 𝐟𝐮𝐧𝐜𝐭𝐢𝐨𝐧𝐚𝐥, 𝐚𝐧𝐝 𝐬𝐭𝐫𝐚𝐢𝐧-𝐥𝐞𝐯𝐞𝐥 𝐩𝐫𝐨𝐟𝐢𝐥𝐢𝐧𝐠 𝐨𝐟 𝐦𝐞𝐭𝐚𝐠𝐞𝐧𝐨𝐦𝐢𝐜 𝐬𝐚𝐦𝐩𝐥𝐞𝐬. 𝐟𝐨𝐫 𝐦𝐢𝐜𝐫𝐨𝐛𝐢𝐨𝐦𝐞 𝐫𝐞𝐬𝐞𝐚𝐫𝐜𝐡
microbiomejournal.biomedcentral.com/articles/10....
#metagenomic #science #data #lefrenchgut
@inrae-france.bsky.social @institutpasteur.bsky.social
microbiomejournal.biomedcentral.com/articles/10....
#metagenomic #science #data #lefrenchgut
@inrae-france.bsky.social @institutpasteur.bsky.social
Reposted by Julien Tap
Huge congratulations to our colleague @arnauvich.bsky.social for presenting his research on FODMAP restriction and gut microbiota in IBS patients at United European Gastroenterology Week 2025 in Berlin🇩🇪👏! #UEGWeek @myueg.bsky.social @vibmicrobes.bsky.social
October 6, 2025 at 11:54 AM
Huge congratulations to our colleague @arnauvich.bsky.social for presenting his research on FODMAP restriction and gut microbiota in IBS patients at United European Gastroenterology Week 2025 in Berlin🇩🇪👏! #UEGWeek @myueg.bsky.social @vibmicrobes.bsky.social
It was nice to have a chance to present few result from French Gut project.
fme.micalis.fr/congress/202...
#microbiome #EESMicrobiome
fme.micalis.fr/congress/202...
#microbiome #EESMicrobiome
The French Gut at EMBL Human Microbiome Symposium 2025
results from the French Gut project presented at the EMBL Human Microbiome Symposium
fme.micalis.fr
September 18, 2025 at 10:55 PM
It was nice to have a chance to present few result from French Gut project.
fme.micalis.fr/congress/202...
#microbiome #EESMicrobiome
fme.micalis.fr/congress/202...
#microbiome #EESMicrobiome
Reposted by Julien Tap
Starting my journey from Australia to Heidelberg 🇩🇪 to the @embl.org Human Microbiome conference
It’s not every day we get the chance of 4 days of human microbiome research 🤩🤩🤩 I’m so excited
Still chance to attend it online 👇
www.embl.org/about/info/c...
It’s not every day we get the chance of 4 days of human microbiome research 🤩🤩🤩 I’m so excited
Still chance to attend it online 👇
www.embl.org/about/info/c...
The human microbiome
www.embl.org
September 13, 2025 at 5:01 PM
Starting my journey from Australia to Heidelberg 🇩🇪 to the @embl.org Human Microbiome conference
It’s not every day we get the chance of 4 days of human microbiome research 🤩🤩🤩 I’m so excited
Still chance to attend it online 👇
www.embl.org/about/info/c...
It’s not every day we get the chance of 4 days of human microbiome research 🤩🤩🤩 I’m so excited
Still chance to attend it online 👇
www.embl.org/about/info/c...
Reposted by Julien Tap
Question: what’s one piece of advice you’d give to somebody starting out in quantitative ecology?
#QuantitativeEcology #Statistics #R
#QuantitativeEcology #Statistics #R
July 18, 2025 at 10:35 AM
Question: what’s one piece of advice you’d give to somebody starting out in quantitative ecology?
#QuantitativeEcology #Statistics #R
#QuantitativeEcology #Statistics #R
A three-country analysis of the gut #microbiome indicates taxon associations with diet vary by taxon resolution and population
journals.asm.org/doi/10.1128/...
journals.asm.org/doi/10.1128/...
A three-country analysis of the gut microbiome indicates taxon associations with diet vary by taxon resolution and population | mSystems
An analysis of fecal microbiome data from individuals in the United States, United Kingdom, and Mexico shows that associations with dietary components vary both by country and by level of resolution (i.e., genus and strain). Our work sheds light on why ...
journals.asm.org
July 2, 2025 at 4:47 PM
A three-country analysis of the gut #microbiome indicates taxon associations with diet vary by taxon resolution and population
journals.asm.org/doi/10.1128/...
journals.asm.org/doi/10.1128/...
Reposted by Julien Tap
Human gut bacteria bioaccumulate per- and polyfluoroalkyl substances www.nature.com/articles/s41... #jcampubs
Human gut bacteria bioaccumulate per- and polyfluoroalkyl substances - Nature Microbiology
Human gut bacteria bioaccumulate per- and polyfluoroalkyl substances (PFAS), commonly known as forever chemicals, in intracellular aggregates. Colonization of gnotobiotic mice with bioaccumulating bac...
www.nature.com
July 1, 2025 at 1:38 PM
Human gut bacteria bioaccumulate per- and polyfluoroalkyl substances www.nature.com/articles/s41... #jcampubs
One Health World #Microbiome Partnership Summit is coming soon!
Agenda - World One Health Microbiome Summit
June 20, 2025 Académie Nationale de Médecine, Paris
Please note that this program could change.
wmp.symposium.inrae.fr
June 19, 2025 at 11:07 PM
One Health World #Microbiome Partnership Summit is coming soon!
Reposted by Julien Tap
Another review from my lab out this week, on analyzing gut microbiome data from global populations -- tackling computational challenges and providing practical frameworks and resources for the field
With Sabrina Arif, @richabdill.com, @samanthagraham.bsky.social
www.cell.com/trends/micro...
With Sabrina Arif, @richabdill.com, @samanthagraham.bsky.social
www.cell.com/trends/micro...
Analyzing human gut microbiome data from global populations: challenges and resources
Research on the human gut microbiome is expanding rapidly; yet, most published studies
focus on populations from high-income regions such as North America and Europe. Underrepresentation
of population...
www.cell.com
June 18, 2025 at 10:12 PM
Another review from my lab out this week, on analyzing gut microbiome data from global populations -- tackling computational challenges and providing practical frameworks and resources for the field
With Sabrina Arif, @richabdill.com, @samanthagraham.bsky.social
www.cell.com/trends/micro...
With Sabrina Arif, @richabdill.com, @samanthagraham.bsky.social
www.cell.com/trends/micro...
Reposted by Julien Tap
This is so cool - octopus can sense microbiomes: sending a gift link www.nytimes.com/2025/06/17/s...
Eight Arms to Taste Your Microbiome
www.nytimes.com
June 19, 2025 at 5:45 PM
This is so cool - octopus can sense microbiomes: sending a gift link www.nytimes.com/2025/06/17/s...
If you are an european citizen and you think we should ban conversion practices targeting LGBTQ+ citizens.
You should sign this.
Half of signature are from France, we need more countries!
eci.ec.europa.eu/043/public/#...
You should sign this.
Half of signature are from France, we need more countries!
eci.ec.europa.eu/043/public/#...
European Citizens' Initiative
Give your support !
eci.ec.europa.eu
May 16, 2025 at 5:25 PM
If you are an european citizen and you think we should ban conversion practices targeting LGBTQ+ citizens.
You should sign this.
Half of signature are from France, we need more countries!
eci.ec.europa.eu/043/public/#...
You should sign this.
Half of signature are from France, we need more countries!
eci.ec.europa.eu/043/public/#...
Reposted by Julien Tap
Do people in the same household share strains when they have the same species?
How many cells transmit when a strain is shared?
Can strain composition be dynamic when species composition is stable?
We answer these and related questions for the facial skin microbiome in our latest paper.
🧵[1/10]
How many cells transmit when a strain is shared?
Can strain composition be dynamic when species composition is stable?
We answer these and related questions for the facial skin microbiome in our latest paper.
🧵[1/10]
May 1, 2025 at 6:41 PM
Do people in the same household share strains when they have the same species?
How many cells transmit when a strain is shared?
Can strain composition be dynamic when species composition is stable?
We answer these and related questions for the facial skin microbiome in our latest paper.
🧵[1/10]
How many cells transmit when a strain is shared?
Can strain composition be dynamic when species composition is stable?
We answer these and related questions for the facial skin microbiome in our latest paper.
🧵[1/10]
Reposted by Julien Tap
Thrilled to share that our manuscript on strain-level gut microbiome variation across diverse populations and human phenotypes is out today in @cellpress.bsky.social
Curious about how strain diversity relates to human traits? Follow this thread! 🌍 (1/n)
www.sciencedirect.com/science/arti...
Curious about how strain diversity relates to human traits? Follow this thread! 🌍 (1/n)
www.sciencedirect.com/science/arti...
Global genetic structure of human gut microbiome species is related to geographic location and host health
The human gut harbors thousands of microbial species, each exhibiting significant inter-individual genetic variability. Although many studies have ass…
www.sciencedirect.com
April 30, 2025 at 4:15 PM
Thrilled to share that our manuscript on strain-level gut microbiome variation across diverse populations and human phenotypes is out today in @cellpress.bsky.social
Curious about how strain diversity relates to human traits? Follow this thread! 🌍 (1/n)
www.sciencedirect.com/science/arti...
Curious about how strain diversity relates to human traits? Follow this thread! 🌍 (1/n)
www.sciencedirect.com/science/arti...
Reposted by Julien Tap
Wow! Our paper in @natmicrobiol.nature.com has just surpassed 10,000 views in less than a month!! a rare feat for a #plant #microbiome study! We argue that seed-borne bacteria are the architects of the wheat rhizobiome. Thanks to everyone who’s been engaging with our work :) doi.org/10.1038/s415...
Seed-borne bacteria drive wheat rhizosphere microbiome assembly via niche partitioning and facilitation - Nature Microbiology
A sequential propagation strategy shows how the microbes initially on seeds are key to building complex, reproducible and heritable plant microbiomes.
doi.org
April 19, 2025 at 4:33 PM
Wow! Our paper in @natmicrobiol.nature.com has just surpassed 10,000 views in less than a month!! a rare feat for a #plant #microbiome study! We argue that seed-borne bacteria are the architects of the wheat rhizobiome. Thanks to everyone who’s been engaging with our work :) doi.org/10.1038/s415...
If you're a PhD student, Master's student or researcher interested in #artificial #intelligence applications to microbial ecosystems and in particular the gut #microbiome, we're organizing a researchers' school here:
ai-microbiome-school.onrender.com/speakers
ai-microbiome-school.onrender.com/speakers
Speakers | SCHOOL OF ARTIFICIAL INTELLIGENCE APPLIED TO MICROBIOMES
Meet the speakers at the School of AI Applied to Microbiomes
ai-microbiome-school.onrender.com
April 7, 2025 at 2:35 PM
If you're a PhD student, Master's student or researcher interested in #artificial #intelligence applications to microbial ecosystems and in particular the gut #microbiome, we're organizing a researchers' school here:
ai-microbiome-school.onrender.com/speakers
ai-microbiome-school.onrender.com/speakers
Reposted by Julien Tap
Delighted our study (7+ years in the making) is out today in Nature. In a nutshell, 48 hours of antibiotics in week 1 led to impaired vaccine responses up to 15 months later in infants. We show (in-vivo) a probiotic can fix it #microbiome #science #immunology
www.nature.com/articles/s41...
www.nature.com/articles/s41...
Bifidobacteria support optimal infant vaccine responses - Nature
Neonatal antibiotic use is shown to reduce immune response to infant vaccines, accompanied by reduced abundance of Bifidobacteria in the gut microbiota, with experiments in mice indicating that probio...
www.nature.com
April 2, 2025 at 11:33 PM
Delighted our study (7+ years in the making) is out today in Nature. In a nutshell, 48 hours of antibiotics in week 1 led to impaired vaccine responses up to 15 months later in infants. We show (in-vivo) a probiotic can fix it #microbiome #science #immunology
www.nature.com/articles/s41...
www.nature.com/articles/s41...
Factors shaping #vaginal #microbiota long-term community dynamics in young adult women
#microbiome
peercommunityjournal.org/articles/10....
#microbiome
peercommunityjournal.org/articles/10....
Factors shaping vaginal microbiota long-term community dynamics in young adult women
peercommunityjournal.org
April 2, 2025 at 11:58 PM
Factors shaping #vaginal #microbiota long-term community dynamics in young adult women
#microbiome
peercommunityjournal.org/articles/10....
#microbiome
peercommunityjournal.org/articles/10....
The DOMINO project held its second annual meeting from 26 to 28 March in the city of Cork. It was an intense and warm moment thanks to the efficient and very friendly organisation of Teagasc and its incredible team coordinated by Orla O’Sullivan and John Kenny.
fme.micalis.fr/meeting/2025...
fme.micalis.fr/meeting/2025...
Lovely second annual meeting of DOMINO project in Cork, Ireland
26th-28th March, Lovely second annual meeting of DOMINO project in Cork, Ireland
fme.micalis.fr
March 29, 2025 at 4:58 PM
The DOMINO project held its second annual meeting from 26 to 28 March in the city of Cork. It was an intense and warm moment thanks to the efficient and very friendly organisation of Teagasc and its incredible team coordinated by Orla O’Sullivan and John Kenny.
fme.micalis.fr/meeting/2025...
fme.micalis.fr/meeting/2025...
Thank you @teagasc.bsky.social and @ucc.ie for hosting the #dominoEU annual meeting in lovely Cork city #food #gut #microbiome
March 28, 2025 at 1:01 PM
Thank you @teagasc.bsky.social and @ucc.ie for hosting the #dominoEU annual meeting in lovely Cork city #food #gut #microbiome