@jianxuchen.bsky.social
We hope this new INR-based image compression scheme provides a new perspective on microscopy data management. Personally, I find the flexible decoding scheme of INR-based compression has great potentials for visualizing and processing extremely large microscopy images.
📢Out now! @jianxuchen.bsky.social and colleagues from @isas-leibniz.bsky.social present a flexible AI-based method for compressing microscopy images, achieving high compression while preserving details that are critical for downstream analysis. www.nature.com/articles/s43... #Bioimaging #microscopy
Implicit neural image field for biological microscopy image compression - Nature Computational Science
This study presents a flexible AI-based method for compressing microscopy images, achieving high compression while preserving details critical for analysis, with support for task-specific optimization and arbitrary-resolution decompression.
www.nature.com
October 10, 2025 at 7:34 PM
We hope this new INR-based image compression scheme provides a new perspective on microscopy data management. Personally, I find the flexible decoding scheme of INR-based compression has great potentials for visualizing and processing extremely large microscopy images.
We have a new PhD position to work on large vision models and their applications in microscopy images. Come to join our highly diverse and interdisciplinary team in Dortmund, Germany.
bewerbermanagement.net/jobposting/5...
bewerbermanagement.net/jobposting/5...
PhD Candidate (m/f/d): Analysis of Microscopic BIOMedical Images (AMBIOM)
Für die Abteilung IT-Services an unserem Standort in Dortmund suchen wir eine/n
bewerbermanagement.net
July 2, 2025 at 8:06 PM
We have a new PhD position to work on large vision models and their applications in microscopy images. Come to join our highly diverse and interdisciplinary team in Dortmund, Germany.
bewerbermanagement.net/jobposting/5...
bewerbermanagement.net/jobposting/5...
Data-Centric AI in Bioimaging! With 10+ researchers from U.S./Germany/China, we surveyed existing data centric AI works, put them in a bioimaging context, as a 4-stage prototypical framework. The paper is now on npj Imaging: www.nature.com/articles/s44.... We hope more BIA tools can be data-centric.
Rethinking deep learning in bioimaging through a data centric lens - npj Imaging
Deep learning has become essential in bioimaging for tasks. By examining data-centric strategies in general AI and revisiting existing deep learning methods in bioimaging, we describe a prototypical “...
www.nature.com
June 26, 2025 at 4:36 PM
Data-Centric AI in Bioimaging! With 10+ researchers from U.S./Germany/China, we surveyed existing data centric AI works, put them in a bioimaging context, as a 4-stage prototypical framework. The paper is now on npj Imaging: www.nature.com/articles/s44.... We hope more BIA tools can be data-centric.
Link to information about the job: bewerbermanagement.net/jobposting/4...
February 7, 2025 at 1:05 PM
Link to information about the job: bewerbermanagement.net/jobposting/4...
We are hiring a new PhD for a bilateral CRCNS project between ISAS (Germany) and Stony Brook (USA) to build topology informed deep learning system for neuroscience. This position is at my group at ISAS in Germany (100% E13 level). DM me if you are interested in. The offical link will be up shortly.
February 4, 2025 at 3:43 PM
We are hiring a new PhD for a bilateral CRCNS project between ISAS (Germany) and Stony Brook (USA) to build topology informed deep learning system for neuroscience. This position is at my group at ISAS in Germany (100% E13 level). DM me if you are interested in. The offical link will be up shortly.
A new pre-print for our LSFM lovers in the bioimaging community: www.researchsquare.com/article/rs-5... (python + napari). We would love to hear your feedbacks. Thanks for the Peng Lab in Helmholtz Munich and the Huisken Lab in Göttingen for having us along the journey in this great collaboration.
Leonardo: A Toolset to Remove Sample-Induced Aberrations in Light Sheet Microscopy Images
Selective plane illumination microscopy (SPIM, also known as light sheet fluorescence microscopy) is the method of choice for studying organ morphogenesis and function, as it permits gentle and rapid ...
www.researchsquare.com
January 24, 2025 at 12:35 PM
A new pre-print for our LSFM lovers in the bioimaging community: www.researchsquare.com/article/rs-5... (python + napari). We would love to hear your feedbacks. Thanks for the Peng Lab in Helmholtz Munich and the Huisken Lab in Göttingen for having us along the journey in this great collaboration.
Wish everyone a happy holiday!
December 22, 2024 at 9:45 AM
Wish everyone a happy holiday!
Nice to see our paper online before the holiday: www.cambridge.org/core/journal...
A very preliminary study on AI-based compression for microscopy images, resulted from a master thesis.
A very preliminary study on AI-based compression for microscopy images, resulted from a master thesis.
Deep-learning-based image compression for microscopy images: An empirical study | Biological Imaging | Cambridge Core
Deep-learning-based image compression for microscopy images: An empirical study - Volume 4
www.cambridge.org
December 20, 2024 at 10:36 AM
Nice to see our paper online before the holiday: www.cambridge.org/core/journal...
A very preliminary study on AI-based compression for microscopy images, resulted from a master thesis.
A very preliminary study on AI-based compression for microscopy images, resulted from a master thesis.
Look back at 2024, a year full of gratitude (thread) for myself and my group at Leibniz ISAS. (1) Community: As a young PI, I got tons of encouragement, trust and supports from the bioimaging and AI community. In early 2024, I was thrilled to organize my very-first Dagstuhl seminar on bioimaging AI.
December 16, 2024 at 11:22 AM
Look back at 2024, a year full of gratitude (thread) for myself and my group at Leibniz ISAS. (1) Community: As a young PI, I got tons of encouragement, trust and supports from the bioimaging and AI community. In early 2024, I was thrilled to organize my very-first Dagstuhl seminar on bioimaging AI.
First post on Bluesky: if you are interested in doing a 100% fully funded PhD in Germany in multimodal bioimaging AI, drop me a message:)
December 12, 2024 at 9:43 AM
First post on Bluesky: if you are interested in doing a 100% fully funded PhD in Germany in multimodal bioimaging AI, drop me a message:)