Jeffrey J. Gray
@jeffreyjgray.bsky.social
Johns Hopkins Chemical & Biomolecular Engineering Professor, Co-Director of RosettaCommons, protein engineer, Baltimore resident, father of two. he/him
A comparison of DFMDock performance to Rosetta's top ranked structure. Read the preprint here: www.biorxiv.org/content/10.1...
October 8, 2025 at 6:31 PM
A comparison of DFMDock performance to Rosetta's top ranked structure. Read the preprint here: www.biorxiv.org/content/10.1...
By using an additional prediction head for an energy with its gradient matched to the score, we extract an energy function and compare it to Rosetta, an empirically tuned physically-inspired energy function. The learned energy sometimes recovers funnels with near-native minima, and sometimes not!
October 8, 2025 at 6:28 PM
By using an additional prediction head for an energy with its gradient matched to the score, we extract an energy function and compare it to Rosetta, an empirically tuned physically-inspired energy function. The learned energy sometimes recovers funnels with near-native minima, and sometimes not!
Would love to follow jazzway here instead of... Anywhere else
May 4, 2025 at 12:16 AM
Would love to follow jazzway here instead of... Anywhere else
The Rosetta Commons REU (summer) and RaMP (postbac) applications are open! Apply to research in a molecular modeling and design laboratory. REU: rosettacommons.org/about/intern RaMP: rosettacommons.org/about/post-b... Application Help: docs.google.com/document/d/1... #Postbac #undergrad #compbio
Rosetta Commons Research Experience for Undergraduates | RosettaCommons
rosettacommons.org
November 20, 2023 at 4:54 PM
The Rosetta Commons REU (summer) and RaMP (postbac) applications are open! Apply to research in a molecular modeling and design laboratory. REU: rosettacommons.org/about/intern RaMP: rosettacommons.org/about/post-b... Application Help: docs.google.com/document/d/1... #Postbac #undergrad #compbio
hope we can build another good protein science community here.
October 2, 2023 at 12:59 AM
hope we can build another good protein science community here.
Thanks Roland, I'm in! So glad to be here.
October 2, 2023 at 12:58 AM
Thanks Roland, I'm in! So glad to be here.