Ignacio Arganda-Carreras
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iarganda.bsky.social
Ignacio Arganda-Carreras
@iarganda.bsky.social
800 followers 400 following 89 posts
Bioimage analysis and computer vision enthusiast. Whenever I can, I do software too.

Ikerbasque | University of the Basque Country (UPV/EHU) | DIPC | Biofisika Institute

ORCID: 0000-0003-0229-5722
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iarganda.bsky.social
Ignacio Arganda-Carreras @iarganda.bsky.social · 5d
🗓️ Important update for the candidates!

The provisional list of admitted and excluded applications for the FPI 2025 call (associated with the project TOSBI – MCIU-NO24/P36) has been published by the University of the Basque Country (UPV/EHU).

🔗 Check the list here: www.ehu.eus/documents/29...
www.ehu.eus
iarganda.bsky.social
❗The official application call for our PhD position has already started:

www.ehu.eus/es/web/ikerk...

Since most of the application is in either Spanish or Basque, I have prepared a document in English 👇

drive.google.com/file/d/1q0mH...

Looking forward to receiving applications! 🤩
October 14, 2025 at 7:57 AM
Reposted by Ignacio Arganda-Carreras
jytinevez.bsky.social
Hi all. This is the recording of the online seminar I gave following the kind invitation of #GLOBIAS.

I share what we have learned delivering #BioimageAnalysis services in the IAH core facility of the @institutpasteur.bsky.social

research.pasteur.fr/en/team/imag...
⬇️
October 13, 2025 at 8:10 AM
Reposted by Ignacio Arganda-Carreras
acorbat.bsky.social
¡Atención comunidad científica de Latam! 🌎🔬

Desde Latin American Bioimaging (@latambioimaging.bsky.social) organizamos un evento de networking único para conectar, colaborar y crecer.

¿Sos estudiante, estás en tu doctorado o ya investigás? ¡Esto es para vos! Abro hilo 👇
latambioimaging.bsky.social Latin America Bioimaging (LABI) @latambioimaging.bsky.social · Oct 9
🔬 Encuentro de Microscopía y Colaboración Científica con Estudiantes e Investigadores.

Orientado a estudiantes de grado, posgrado e investigadores, este encuentro propone dialogar sobre investigación, formación y colaboración regional.

📆 12 de noviembre | 14:00 a 16:30
October 9, 2025 at 6:00 PM
iarganda.bsky.social
✨ Fantastic opportunity for people looking for image facility jobs! What better than working with the awesome @jytinevez.bsky.social in Paris? 🤩

#bioimaging #bioimageanalysis #facilityjob

👇
October 8, 2025 at 8:01 AM
iarganda.bsky.social
👇 The official call opening has been delayed ⌛ by the university to the end of this week.

Sorry about that, I'll keep you posted! 🙏
October 7, 2025 at 9:14 AM
iarganda.bsky.social
📣 We’re hiring, please RT! Fully funded 4-year PhD position in our CVPD group at @informatikaehu.bsky.social!

Research at the intersection of AI, deep learning & bioimage analysis. 🧠🔬

📅 Applications open Oct 6 (deadline: ~Oct 27)
📍 San Sebastian, Spain.
👉 cvpd.github.io/post/2025-09...
📢 Open 4-year PhD Position in Deep Learning for Bioimage Analysis! | CVPD Research group
The Computer Vision and Pattern Discovery (CVPD) group at the University of the Basque Country (UPV/EHU) is offering a fully funded 4-year PhD position within the recently awarded project TOSBI: Towar...
cvpd.github.io
September 30, 2025 at 11:01 AM
Reposted by Ignacio Arganda-Carreras
katedra.eus
Resulta que en #NaukasBilbao25 hasta las moléculas de agua bailan, con @elirezabal.bsky.social
September 20, 2025 at 10:28 AM
iarganda.bsky.social
¿Alguien en Bilbao hoy (sábado 20 de septiembre)?

No perderse la charla de la maravillosa @elirezabal.bsky.social 😍 (@theochemehu.bsky.social, @dipcehu.bsky.social) en @naukas.bsky.social #NAUKAS2025

⏰11:30 a 11:40 – 💫Elixabete Rezabal💫 – ¿Hueles vibraciones? 👃📳

naukas.com/2025/09/12/p...
Programa definitivo de Naukas Bilbao 15º Aniversario - Naukas
Programa definitivo Naukas Bilbao 15 Aniversario (19 al 21 septiembre 2025)
naukas.com
September 20, 2025 at 5:37 AM
Reposted by Ignacio Arganda-Carreras
spaincivilwartours.bsky.social
First page of 18th century Basque-Icelandic dictionary. A Basque-Icelandic pidgin was spoken between locals and Basque whalers from ~1600 including the well-known expression "Fenicha for ju" meaning F**k you! en.m.wikipedia.org/wiki/Basque%...
September 19, 2025 at 5:29 PM
iarganda.bsky.social
Thanks a lot, @ahklemm.bsky.social! It's tough to post on social networks while presenting 😜

I hope the students of the @embo.org course on Advanced methods in #BioimageAnalysis liked @biapyx.bsky.social 🤗
ahklemm.bsky.social Anna Klemm @ahklemm.bsky.social · Sep 19
@iarganda.bsky.social also on the stage by himself, giving an introduction to BiaPy @biapyx.bsky.social for streamlining deep-learning workflows. A tool tailored to be convenient to use by the full range of bioimage analysis experts.
September 19, 2025 at 10:04 AM
iarganda.bsky.social
And here we are on Day 6️⃣ of our @embo.org course on "Advanced methods in bioimage analysis"! 🔬🖥️📊 @events.embl.org

Anna Kreshuk is already shining at the stage answering questions about Practical session 6: "AI for Life Sciences" 🤖🧬🧪, especially about @ilastik-team.bsky.social ✊🖌️
Classroom view of the Practical session 6: "AI for Life Sciences", on Day 6 of EMBO course on Advanced methods in bioimage analysis. Anna Kreshuk is already addressing the crowd of students, while they seat on their computer posts. Classroom view of the Practical session 6: "AI for Life Sciences", on Day 6 of EMBO course on Advanced methods in bioimage analysis. Anna Kreshuk answers the questions of the students, while she holds a cup of tea. Panoramic view of the classroom during Practical session 6: "AI for Life Sciences", on Day 6 of EMBO course on Advanced methods in bioimage analysis. Anna Kreshuk answers the questions of the students from the stage.
September 19, 2025 at 9:41 AM
iarganda.bsky.social
Day 5️⃣ of our @embo.org course on "Advanced methods in bioimage analysis"! 🔬🖥️📊 @embl.org

@tischi.bsky.social is already launching 🚀 Lecture 4: Introduction to working with OME-Zarr (Tutorial) @openmicroscopy.org @zarr.dev
Christian Tischer addresses the online participants of the EMBO Advanced methods in biomage analysis course before starting his tutorial on OME-Zarr. Christian Tischer gets prepared to start his tutorial on OME-Zarr in front a full classroom. Christian Tischer gives the first intructions to the onsite and the online participants of the EMBO Advanced methods in biomage analysis course for his tutorial on OME-Zarr.
September 18, 2025 at 7:23 AM
Reposted by Ignacio Arganda-Carreras
amaiacipitria.bsky.social
We are hiring, please RT! Lab manager in the #HEALIKICK #H2020 #HorizonEU project, responsible for biological sample processing and general lab aspects. Biotechnology, Biomedical engineering, Biomedicine or similar. @biogipuzkoa @Ikerbasque. More info & apply until 15/10 👉https://bit.ly/46tSKUl
September 17, 2025 at 8:44 AM
iarganda.bsky.social
And here we go again with Day 4️⃣ of the @embo.org course on "Advanced methods in bioimage analysis"! 🔬🖥️📊

We just started "Pratical session 5: Spatial statistics and omics integration" with @brittavelten.bsky.social and her team 💪 from @uniheidelberg.bsky.social ...
Anna Klemm presents Britta Velten (from Heidelberg University) before Practical session 5 (Spatial statistics and omics integration) in the presence of Nikolai Köhler and Wangjun Hu. Britta Velten on stage addressing the course students. Panoramic view of the classroom full of students attending the practical session by Britta Velten, Nikolai Köhler and Wangjun Hu.
September 17, 2025 at 7:24 AM
Reposted by Ignacio Arganda-Carreras
haesleinhuepf.bsky.social
I gave two seminars at @embl.org Heidelberg these days: One about using LLMs via #biabob for #BioImageAnalysis and one about how LLMs impact BioImage #DataScience
Thanks EMBL for having me!
Materials #openaccess 🧑‍🏫🖥️🔓
zenodo.org/records/1705...
zenodo.org/records/1710...
scads.github.io/llm-bia-2025
September 16, 2025 at 7:02 PM
iarganda.bsky.social
Day 3️⃣ of our @embo.org course on "Advanced methods in bioimage analysis" at @embl.org with "Practical session 3: Tracking" 🔬🦠🔀.

@jytinevez.bsky.social is already shining at the stage! 🕺🪩.

Important update: #TrackMate v8 is coming! 🤗
Jean-Yves Tinevez addresses the students of the EMBO course to present "Practical session 3: Tracking". Jean-Yves Tinevez shows an slide about "Scientific tools to track cells and organelles", including TrackMate, MaMuT and Mastodon software. Jean-Yves Tinevez shows an slide about TrackMate v8, with bacteria images already segmented. Jean-Yves Tinevez shows an slide entitled "A collection of tracking components at your fingertips", showing a long list of segmentation software including MorphoLibJ, Trainable Weka Segmentation, Ilastik, StarDist, cellpose, and more.
September 16, 2025 at 8:10 AM
iarganda.bsky.social
Day 2️⃣ of our @embo.org course on "Advanced methods in bioimage analysis" 🔬🖥️🧫 at @embl.org with "Practical session 1:
Image Analysis workflow and data management" 💽📊 with the awesome @virginieuhlmann.bsky.social 🤩 Let's the fun start! 💫
Full room of students for the first practical session of day #2 at the Advanced methods in bioimage analysis EMBO course at EMBL. Christian Tischer gives instructions to students in the classroom of the second day of the Advanced methods in bioimage analysis EMBO course at EMBL. List of students and training positions for the Advanced methods in bioimage analysis EMBO course. Virginie Uhlmann addresses the students on the second day of the Advanced methods in bioimage analysis EMBO course at EMBL.
September 15, 2025 at 8:43 AM
Reposted by Ignacio Arganda-Carreras
embl.org
Join EMBL AI!

We have ambitious plans to transform life sciences research through AI.

Interested in using ML/AI to solve complex interdisciplinary challenges?

We’re looking for two senior leaders based at EMBL Heidelberg👇
September 11, 2025 at 7:24 AM
Reposted by Ignacio Arganda-Carreras
guijacquemet.bsky.social
Come and work with us 5-year position available for a University Researcher in Bioimaging 1.11.2025-31.12.2030

abo.rekrytointi.com/paikat/index...
University Researcher in Bioimaging / Universitetsforskare med inriktning bioimaging, 1.11.2025-31.12.2030
abo.rekrytointi.com
September 10, 2025 at 11:28 AM
Reposted by Ignacio Arganda-Carreras
ekazakos.bsky.social
Hi friends! I made a computer vision feed that was missing on Bluesky.

You can find it here: bsky.app/profile/did:.... Pin it to your profile if you like it. 😉

It filters relevant posts based on regular expressions. But to make sure that your post is included in the feed, add the #skyvision tag.
August 31, 2025 at 5:46 PM
iarganda.bsky.social
In the heat of the summer... jump into @biapyx.bsky.social 's boat! ⛴️ 😜
biapyx.bsky.social BiaPy @biapyx.bsky.social · Jul 15
⛴️ BiaPy just reached version 3.6.1 💫 (latest release)!

github.com/BiaPyX/BiaPy...

➡️ v3.6.1 came right after (the more dense) v3.6.0 to fix some small bugs 🐞

Let me tell you a bit about what's new 👇
Release Version 3.6.1 · BiaPyX/BiaPy
Minor: Disable painting matching instances by default as it takes a lot of time, i.e. TEST.MATCHING_STATS_THS_COLORED_IMG to [] (#135) Refine DA notebook Update notebooks to install BiaPy v3.6.0 ...
github.com
July 16, 2025 at 8:17 AM
Reposted by Ignacio Arganda-Carreras
events.embl.org
Are you looking to advance your bioimage analysis skills? Then don't miss the deadline for #EMBOBioImage 🔬✨

📩 Apply by 4 June
➡️ https://s.embl.org/bia25-01-bl
🗓️ 14 – 19 September
📍 EMBL Heidelberg and Virtual
May 21, 2025 at 12:11 PM
iarganda.bsky.social
👉 Last days to apply! 👇
iarganda.bsky.social Ignacio Arganda-Carreras @iarganda.bsky.social · May 13
🆕 We're hiring! We're looking for postdoc 🎓 candidates to work at the intersaction of bioimage analysis 🖥️🔬, tissue biomechanics 🧫, and neuroscience 🧠.

👉 Application deadline: 2025/06/02
👉 Duration: July 2025 - December 2026 (for now)

Come work with us! 🤗

dipc.ehu.eus/en/dipc/join...
Joint Postdoctoral Position in Biophysics – Bioimage Analysis / AI / Neuroscience
dipc.ehu.eus
May 29, 2025 at 10:28 AM
Reposted by Ignacio Arganda-Carreras
ai4life.bsky.social
🧠 AI4Life wouldn’t be the same without the amazing BioImage.IO community partners!
Now showcasing real-world tools from our partners: DeepIcy, @biapyx.bsky.social, SpotMAX and QuPath.

Huge thanks to our collaborators!
May 27, 2025 at 9:05 AM