Hasanul Banna Siam
@hasansiam.xyz
PhD Student at University of Alabama at Birmingham | Immunology, Aging, Bioinformatics | Tyrrell Lab | www.hasansiam.xyz
FireDucks for Pandas is amazing.
Kudos to the developers.
Its like Pandas on fire!
Kudos to the developers.
Its like Pandas on fire!
July 4, 2025 at 3:29 AM
FireDucks for Pandas is amazing.
Kudos to the developers.
Its like Pandas on fire!
Kudos to the developers.
Its like Pandas on fire!
Reposted by Hasanul Banna Siam
I have included side-chain reconstruction using HPacker in the BioEmu Notebook. Thank you to @martinsteinegger.bsky.social whose notebook provided inspiration for incorporating the cell to add side-chain reconstruction.
🔗 Try it on Google Colab: colab.research.google.com/github/pablo...
🔗 Try it on Google Colab: colab.research.google.com/github/pablo...
I’ve just updated the BioEmu notebook to include the powerful LogMD. Now, you can generate equilibrium ensembles and explore the full ensemble directly in the notebook.
A huge thanks to Alexander Mathiasen for the support! 🙌
🔗 Try it on Google Colab: lnkd.in/gcuqd-fT
A huge thanks to Alexander Mathiasen for the support! 🙌
🔗 Try it on Google Colab: lnkd.in/gcuqd-fT
April 2, 2025 at 12:34 AM
I have included side-chain reconstruction using HPacker in the BioEmu Notebook. Thank you to @martinsteinegger.bsky.social whose notebook provided inspiration for incorporating the cell to add side-chain reconstruction.
🔗 Try it on Google Colab: colab.research.google.com/github/pablo...
🔗 Try it on Google Colab: colab.research.google.com/github/pablo...
So happy to see our paper is published in Bioinformatics!
Super excited to announce our new paper (and tool) spearheaded by
@hasansiam.xyz
! CAFE (cell analyzer for flow experiments) is a user-friendly web app to analyze flow cytometry data. No coding required! Check out the paper academic.oup.com/bioinformati... 🔬💻
@hasansiam.xyz
! CAFE (cell analyzer for flow experiments) is a user-friendly web app to analyze flow cytometry data. No coding required! Check out the paper academic.oup.com/bioinformati... 🔬💻
April 26, 2025 at 12:15 PM
So happy to see our paper is published in Bioinformatics!
It is extremely frustrating that developers spend a year making a package or tool but cannot spend a day or two writing proper instructions on how to use the tool.
Half of our time is wasted trying to figure out how to actually install, set up the tool, and pre-process the data.
#Bioinformatics
Half of our time is wasted trying to figure out how to actually install, set up the tool, and pre-process the data.
#Bioinformatics
January 31, 2025 at 12:00 AM
It is extremely frustrating that developers spend a year making a package or tool but cannot spend a day or two writing proper instructions on how to use the tool.
Half of our time is wasted trying to figure out how to actually install, set up the tool, and pre-process the data.
#Bioinformatics
Half of our time is wasted trying to figure out how to actually install, set up the tool, and pre-process the data.
#Bioinformatics
If you don't like your long BlueSKy user handle, you can update it with your website name. I just changed mine and it looks much better and shorter.
#Bsky
#userhandle
#Bsky
#userhandle
January 15, 2025 at 6:42 PM
If you don't like your long BlueSKy user handle, you can update it with your website name. I just changed mine and it looks much better and shorter.
#Bsky
#userhandle
#Bsky
#userhandle
Reposted by Hasanul Banna Siam
CAFE: An Integrated Web App for High-Dimensional Analysis and Visualization in Spectral Flow Cytometry https://www.biorxiv.org/content/10.1101/2024.12.03.626714v1
December 8, 2024 at 12:05 AM
CAFE: An Integrated Web App for High-Dimensional Analysis and Visualization in Spectral Flow Cytometry https://www.biorxiv.org/content/10.1101/2024.12.03.626714v1
Reposted by Hasanul Banna Siam
🌟 Whether you’re a new student, lab leader or decision-maker at an institutional level, you can now find free tools and guidance all in one place.
Our Learning Resources page launched in October thanks to insights from eLife Ambassadors. #12DaysOfeLife
https://buff.ly/4f8vIpk
Our Learning Resources page launched in October thanks to insights from eLife Ambassadors. #12DaysOfeLife
https://buff.ly/4f8vIpk
Learning resources for scientists · eLife
A collections of articles that provide practical resources and guidance for researchers and academics
buff.ly
December 25, 2024 at 2:01 PM
🌟 Whether you’re a new student, lab leader or decision-maker at an institutional level, you can now find free tools and guidance all in one place.
Our Learning Resources page launched in October thanks to insights from eLife Ambassadors. #12DaysOfeLife
https://buff.ly/4f8vIpk
Our Learning Resources page launched in October thanks to insights from eLife Ambassadors. #12DaysOfeLife
https://buff.ly/4f8vIpk
Reposted by Hasanul Banna Siam
An essay in Nature discusses how it’s an astonishing achievement that all of statistics and much of science depends on probability considering no one’s sure what it is. 🧪
Why probability probably doesn’t exist (but it is useful to act like it does)
All of statistics and much of science depends on probability — an astonishing achievement, considering no one’s really sure what it is.
go.nature.com
December 21, 2024 at 8:31 PM
An essay in Nature discusses how it’s an astonishing achievement that all of statistics and much of science depends on probability considering no one’s sure what it is. 🧪
Reposted by Hasanul Banna Siam
That’s why I combine teaching with research. Wise words by Paul Nurse, Nobel Laureate. “Teaching is an antidote to failure”
www.youtube.com/watch?v=0GoF...
www.youtube.com/watch?v=0GoF...
"Teaching is an antidote to failure" Paul Nurse, Nobel Laureate
YouTube video by NobelPrizeII
www.youtube.com
October 21, 2024 at 7:11 PM
That’s why I combine teaching with research. Wise words by Paul Nurse, Nobel Laureate. “Teaching is an antidote to failure”
www.youtube.com/watch?v=0GoF...
www.youtube.com/watch?v=0GoF...
Reposted by Hasanul Banna Siam
Super excited to see this preprint online! Cool work from talented graduate student Md Hasanul Banna Siam
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
CAFE: An Integrated Web App for High-Dimensional Analysis and Visualization in Spectral Flow Cytometry
Spectral flow cytometry provides greater insights into cellular heterogeneity by simultaneous measurement of up to 50 markers. However, analyzing such high-dimensional (HD) data is complex through tra...
www.biorxiv.org
December 8, 2024 at 1:11 AM
Super excited to see this preprint online! Cool work from talented graduate student Md Hasanul Banna Siam
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...