Niko Fleischer
@hal4k.bsky.social
Grad student with @ruth_stassart and @rfledrich @Paul-Flechsig-Institut Leipzig. Neuropathology, peripheral nerves, Schwann cells, Axon-Glia interactions from bed to bench to count matrix.
single-cell tx | spatial tx | image analysis | stats | data viz
single-cell tx | spatial tx | image analysis | stats | data viz
In my experience the whole thing is even more unstable based on the exact set of cells that goes in.
October 7, 2025 at 10:31 AM
In my experience the whole thing is even more unstable based on the exact set of cells that goes in.
It would be interesting to color the cells by Barcode, to see if some are actually changing embedding coordinates more drastically compared to the overall structure. Also interesting would be to subsample the cells prior to each run.
October 7, 2025 at 10:31 AM
It would be interesting to color the cells by Barcode, to see if some are actually changing embedding coordinates more drastically compared to the overall structure. Also interesting would be to subsample the cells prior to each run.
Are the hyperparameters constant, so what we see is just the inherent stochasticity? Asking, while this shows the variability, the overall structure ‚looks‘ still quite constant.
October 7, 2025 at 10:31 AM
Are the hyperparameters constant, so what we see is just the inherent stochasticity? Asking, while this shows the variability, the overall structure ‚looks‘ still quite constant.
Finally something the reads wasted on those damn Malat1 transcripts are good for 🙏
December 3, 2024 at 10:09 AM
Finally something the reads wasted on those damn Malat1 transcripts are good for 🙏
Gosh how I love the look of these lecture halls 🥹 they also sounded so nice
November 28, 2024 at 3:15 PM
Gosh how I love the look of these lecture halls 🥹 they also sounded so nice