Robert Haase
@haesleinhuepf.bsky.social
Biomedical Computer Vision & Language Models, scads.ai / Leipzig University, also NFDI4BIOIMAGE, NEUBIAS/GloBIAS, GPUs, AI, ML 🔬🖥️🚀 views:mine
Pinned
Robert Haase
@haesleinhuepf.bsky.social
· Nov 29
Since I saw this online, I wanted to play it myself: #VLM-Pictionary with human in the loop #opensource! 👾🕹️
Also my drawing skills are exceptional 🖌️🫠
(Inspired by Paul Calcraft and @simonwillison.net )
github.com/haesleinhuep...
Also my drawing skills are exceptional 🖌️🫠
(Inspired by Paul Calcraft and @simonwillison.net )
github.com/haesleinhuep...
Reposted by Robert Haase
What aspects of human knowledge do vision models like CLIP fail to capture, and how can we improve them? We suggest models miss key global organization; aligning them makes them more robust. Check out LukasMuttenthaler's work, finally out (in Nature!?) www.nature.com/articles/s41... + our blog! 1/3
Aligning machine and human visual representations across abstraction levels - Nature
Aligning foundation models with human judgments enables them to more accurately approximate human behaviour and uncertainty across various levels of visual abstraction, while additionally improving th...
www.nature.com
November 12, 2025 at 4:50 PM
What aspects of human knowledge do vision models like CLIP fail to capture, and how can we improve them? We suggest models miss key global organization; aligning them makes them more robust. Check out LukasMuttenthaler's work, finally out (in Nature!?) www.nature.com/articles/s41... + our blog! 1/3
Reposted by Robert Haase
Join our 34th Living Lab Lecture about "Demystifying Data Stream Processing"!
🗣️ Apurv Deepak Kulkarni (@scadsai.bsky.social / @tudresden.bsky.social)
📅 November 20 | 11 AM
📍 Online (https://tud.link/i8zf)
👉 https://scads.ai/event/living-lab-lecture-series/demystifying-data-stream-processing/
🗣️ Apurv Deepak Kulkarni (@scadsai.bsky.social / @tudresden.bsky.social)
📅 November 20 | 11 AM
📍 Online (https://tud.link/i8zf)
👉 https://scads.ai/event/living-lab-lecture-series/demystifying-data-stream-processing/
November 12, 2025 at 12:31 PM
Join our 34th Living Lab Lecture about "Demystifying Data Stream Processing"!
🗣️ Apurv Deepak Kulkarni (@scadsai.bsky.social / @tudresden.bsky.social)
📅 November 20 | 11 AM
📍 Online (https://tud.link/i8zf)
👉 https://scads.ai/event/living-lab-lecture-series/demystifying-data-stream-processing/
🗣️ Apurv Deepak Kulkarni (@scadsai.bsky.social / @tudresden.bsky.social)
📅 November 20 | 11 AM
📍 Online (https://tud.link/i8zf)
👉 https://scads.ai/event/living-lab-lecture-series/demystifying-data-stream-processing/
Reposted by Robert Haase
Would you like to learn more about #XAI?
Take a look at @haesleinhuepf.bsky.social's presentation on "Explainable Machine Learning" on the @scadsai.bsky.social #Zenodo page. It covers the basics, including SHAP analysis and Grad-CAM as examples.
👉 https://f.mtr.cool/mzmitnigaa
Take a look at @haesleinhuepf.bsky.social's presentation on "Explainable Machine Learning" on the @scadsai.bsky.social #Zenodo page. It covers the basics, including SHAP analysis and Grad-CAM as examples.
👉 https://f.mtr.cool/mzmitnigaa
November 9, 2025 at 12:01 PM
Would you like to learn more about #XAI?
Take a look at @haesleinhuepf.bsky.social's presentation on "Explainable Machine Learning" on the @scadsai.bsky.social #Zenodo page. It covers the basics, including SHAP analysis and Grad-CAM as examples.
👉 https://f.mtr.cool/mzmitnigaa
Take a look at @haesleinhuepf.bsky.social's presentation on "Explainable Machine Learning" on the @scadsai.bsky.social #Zenodo page. It covers the basics, including SHAP analysis and Grad-CAM as examples.
👉 https://f.mtr.cool/mzmitnigaa
Reposted by Robert Haase
Seeing our good old AURA-Net from 2021 (doi.org/10.1109/ISBI...) end up 2nd on a 2025 U-Net variants leaderboard was not on my bingo card for this year, but here we are
(source: doi.org/10.48550/arX...)
(source: doi.org/10.48550/arX...)
November 5, 2025 at 1:18 PM
Seeing our good old AURA-Net from 2021 (doi.org/10.1109/ISBI...) end up 2nd on a 2025 U-Net variants leaderboard was not on my bingo card for this year, but here we are
(source: doi.org/10.48550/arX...)
(source: doi.org/10.48550/arX...)
Reposted by Robert Haase
Reposted by Robert Haase
This is the eXplainable AI research channel of the machine learning group of Prof. Klaus-Robert Müller at Technische Universität Berlin @tuberlin.bsky.social & BIFOLD @bifold.berlin.
Let's connect!
#XAI #ExplainableAI #MechInterp #MachineLearning #Interpretability
Let's connect!
#XAI #ExplainableAI #MechInterp #MachineLearning #Interpretability
a black background with green text that says `` hello , world ''
ALT: a black background with green text that says `` hello , world ''
media.tenor.com
November 3, 2025 at 11:43 AM
This is the eXplainable AI research channel of the machine learning group of Prof. Klaus-Robert Müller at Technische Universität Berlin @tuberlin.bsky.social & BIFOLD @bifold.berlin.
Let's connect!
#XAI #ExplainableAI #MechInterp #MachineLearning #Interpretability
Let's connect!
#XAI #ExplainableAI #MechInterp #MachineLearning #Interpretability
Reposted by Robert Haase
#GloBIAS2025 is ongoing with amazing speaker lineups at Kobe city
Beautiful location, amazing food and warm bioimage analysis community. What wlse does one need? 😊
Thanks to @globias.bsky.social for this event
Beautiful location, amazing food and warm bioimage analysis community. What wlse does one need? 😊
Thanks to @globias.bsky.social for this event
October 30, 2025 at 2:12 AM
#GloBIAS2025 is ongoing with amazing speaker lineups at Kobe city
Beautiful location, amazing food and warm bioimage analysis community. What wlse does one need? 😊
Thanks to @globias.bsky.social for this event
Beautiful location, amazing food and warm bioimage analysis community. What wlse does one need? 😊
Thanks to @globias.bsky.social for this event
Reposted by Robert Haase
Using #LLMs for science👨💻💬? We have a fun tool for you: introducing #folder2md4llms. It converts an entire folder of docs/code/pdfs/pptx into a single markdown file that you can upload to your chatbot of choice. We use it to talk with our publications database or code repos
github.com/HenriquesLab...
github.com/HenriquesLab...
October 28, 2025 at 5:22 PM
Using #LLMs for science👨💻💬? We have a fun tool for you: introducing #folder2md4llms. It converts an entire folder of docs/code/pdfs/pptx into a single markdown file that you can upload to your chatbot of choice. We use it to talk with our publications database or code repos
github.com/HenriquesLab...
github.com/HenriquesLab...
Reposted by Robert Haase
We just released "German Commons", the largest openly-licensed German text dataset for LLM training: 154B tokens with clear usage rights for research and commercial use.
huggingface.co/datasets/coral-nlp/german-commons
huggingface.co/datasets/coral-nlp/german-commons
coral-nlp/german-commons · Datasets at Hugging Face
We’re on a journey to advance and democratize artificial intelligence through open source and open science.
huggingface.co
October 27, 2025 at 12:45 PM
We just released "German Commons", the largest openly-licensed German text dataset for LLM training: 154B tokens with clear usage rights for research and commercial use.
huggingface.co/datasets/coral-nlp/german-commons
huggingface.co/datasets/coral-nlp/german-commons
Reposted by Robert Haase
Episode 17 - perhaps my favorite yet. How do you write a forum.image.sc post that will get you the answers you need without revealing information you don't want to tell? @erinweisbart.bsky.social and I go through what the experts need to know to help you. Post your sci q's today on forum.image.sc !
October 27, 2025 at 6:20 PM
Episode 17 - perhaps my favorite yet. How do you write a forum.image.sc post that will get you the answers you need without revealing information you don't want to tell? @erinweisbart.bsky.social and I go through what the experts need to know to help you. Post your sci q's today on forum.image.sc !
I just finished my @unileipzig.bsky.social #LunchLecture. Thanks everyone for the vivid discussion and Nicole Koburger for hosting us!
The slides are online #openaccess 🧑🏫🔓 zenodo.org/records/1742...
The slides are online #openaccess 🧑🏫🔓 zenodo.org/records/1742...
October 23, 2025 at 11:19 AM
I just finished my @unileipzig.bsky.social #LunchLecture. Thanks everyone for the vivid discussion and Nicole Koburger for hosting us!
The slides are online #openaccess 🧑🏫🔓 zenodo.org/records/1742...
The slides are online #openaccess 🧑🏫🔓 zenodo.org/records/1742...
Reposted by Robert Haase
One more open position at the Data Science Centre here! This one is working on our recently open-sourced ELN/LIMS/all-in-one solution LabID (gitlab.com/lab-integrat...). If you have either full stack or scientific workflows experience, check it out! embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
Scientific Developer or Full Stack Developer
The European Molecular Biology Laboratory (EMBL) is a world leader in scientific research and at the forefront in the development of cutting-edge technologies. EMBL core facilities and scientists gene...
embl.wd103.myworkdayjobs.com
October 20, 2025 at 8:06 AM
One more open position at the Data Science Centre here! This one is working on our recently open-sourced ELN/LIMS/all-in-one solution LabID (gitlab.com/lab-integrat...). If you have either full stack or scientific workflows experience, check it out! embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
Reposted by Robert Haase
Missed our #ScaDSAIMeetup on AI insights into the Model Context Protocol (#MCP)?
All talks, workshop materials & repos are now on #Zenodo!
🎤 Talks: https://doi.org/10.5281/zenodo.17158643
🛠️ Workshop: https://zenodo.org/records/17158770"
All talks, workshop materials & repos are now on #Zenodo!
🎤 Talks: https://doi.org/10.5281/zenodo.17158643
🛠️ Workshop: https://zenodo.org/records/17158770"
October 19, 2025 at 11:01 AM
Missed our #ScaDSAIMeetup on AI insights into the Model Context Protocol (#MCP)?
All talks, workshop materials & repos are now on #Zenodo!
🎤 Talks: https://doi.org/10.5281/zenodo.17158643
🛠️ Workshop: https://zenodo.org/records/17158770"
All talks, workshop materials & repos are now on #Zenodo!
🎤 Talks: https://doi.org/10.5281/zenodo.17158643
🛠️ Workshop: https://zenodo.org/records/17158770"
Reposted by Robert Haase
The next @unileipzig.bsky.social's #LunchLectures will take place on October 23, this time featuring @haesleinhuepf.bsky.social from @scadsai.bsky.social . He will give a lecture on “How generative AI influences research and teaching.”
👉 https://f.mtr.cool/srahlhpary
👉 https://f.mtr.cool/srahlhpary
October 18, 2025 at 10:30 AM
The next @unileipzig.bsky.social's #LunchLectures will take place on October 23, this time featuring @haesleinhuepf.bsky.social from @scadsai.bsky.social . He will give a lecture on “How generative AI influences research and teaching.”
👉 https://f.mtr.cool/srahlhpary
👉 https://f.mtr.cool/srahlhpary
Reposted by Robert Haase
As part of our monthly meeting, we do a run-down of all* the new #bioimageanalysis tools that have been published in the last couple of weeks on BioRxiv**, so I thought I'd start sharing here as well.
*I will miss some, apologies if I miss your paper
*I will miss some, apologies if I miss your paper
October 17, 2025 at 7:17 AM
As part of our monthly meeting, we do a run-down of all* the new #bioimageanalysis tools that have been published in the last couple of weeks on BioRxiv**, so I thought I'd start sharing here as well.
*I will miss some, apologies if I miss your paper
*I will miss some, apologies if I miss your paper
Reposted by Robert Haase
Together with the @iom-leipzig.bsky.social, @haesleinhuepf.bsky.social & Matthias Täschner hosted the #AISchool2025 last week in Leipzig. The Materials were provided by @scadsai.bsky.social.
👉 https://f.mtr.cool/yzmimoxbvz
#MachineLearning #DataVisualization #HPCWorkflows
👉 https://f.mtr.cool/yzmimoxbvz
#MachineLearning #DataVisualization #HPCWorkflows
October 16, 2025 at 1:30 PM
Together with the @iom-leipzig.bsky.social, @haesleinhuepf.bsky.social & Matthias Täschner hosted the #AISchool2025 last week in Leipzig. The Materials were provided by @scadsai.bsky.social.
👉 https://f.mtr.cool/yzmimoxbvz
#MachineLearning #DataVisualization #HPCWorkflows
👉 https://f.mtr.cool/yzmimoxbvz
#MachineLearning #DataVisualization #HPCWorkflows
Data Management Plan:
* We will keep all data and literature in open browser tabs sychronized between the computers of all project members using the same Google Chrome profile.
* By the end of the project we publish the username and password of that profile under a CC-BY 4.0 license.
* We will keep all data and literature in open browser tabs sychronized between the computers of all project members using the same Google Chrome profile.
* By the end of the project we publish the username and password of that profile under a CC-BY 4.0 license.
October 15, 2025 at 5:48 PM
Data Management Plan:
* We will keep all data and literature in open browser tabs sychronized between the computers of all project members using the same Google Chrome profile.
* By the end of the project we publish the username and password of that profile under a CC-BY 4.0 license.
* We will keep all data and literature in open browser tabs sychronized between the computers of all project members using the same Google Chrome profile.
* By the end of the project we publish the username and password of that profile under a CC-BY 4.0 license.
"LLMs are here to stay. [...] The best developers won’t be the ones who write every line by hand." 👍
Some thoughts on LLMs, Autopilot, and VibeCoding rahulpandita.me/blog/2025-10...
October 13, 2025 at 5:59 AM
"LLMs are here to stay. [...] The best developers won’t be the ones who write every line by hand." 👍
Reposted by Robert Haase
🚀Join Helsinki BioImaging as an Image Analysis Specialist🖥️to support cross-disciplinary image analysis projects. If you love coding and are interested in working at the crossroads of computer science and biology, apply by 🗓️ November 15, 2025⤵️
jobs.helsinki.fi/job/Helsinki...
#jobopening
jobs.helsinki.fi/job/Helsinki...
#jobopening
Image Analysis Specialist/Engineer/Coordinator, Helsinki Bioimaging
Image Analysis Specialist/Engineer/Coordinator, Helsinki Bioimaging
jobs.helsinki.fi
October 10, 2025 at 1:58 PM
🚀Join Helsinki BioImaging as an Image Analysis Specialist🖥️to support cross-disciplinary image analysis projects. If you love coding and are interested in working at the crossroads of computer science and biology, apply by 🗓️ November 15, 2025⤵️
jobs.helsinki.fi/job/Helsinki...
#jobopening
jobs.helsinki.fi/job/Helsinki...
#jobopening
Reposted by Robert Haase
#Forschungsbewertung im Fokus
Die Veranstaltung am 10.09.25 bot Raum für Austausch: Warum sind Reformen nötig? Welche Chancen und Herausforderungen ergeben sich daraus? Und welchen Mehrwert bietet eine Mitgliedschaft in der internationalen CoARA – Coalition for Advancing #ResearchAssessment?
Die Veranstaltung am 10.09.25 bot Raum für Austausch: Warum sind Reformen nötig? Welche Chancen und Herausforderungen ergeben sich daraus? Und welchen Mehrwert bietet eine Mitgliedschaft in der internationalen CoARA – Coalition for Advancing #ResearchAssessment?
October 7, 2025 at 9:57 AM
#Forschungsbewertung im Fokus
Die Veranstaltung am 10.09.25 bot Raum für Austausch: Warum sind Reformen nötig? Welche Chancen und Herausforderungen ergeben sich daraus? Und welchen Mehrwert bietet eine Mitgliedschaft in der internationalen CoARA – Coalition for Advancing #ResearchAssessment?
Die Veranstaltung am 10.09.25 bot Raum für Austausch: Warum sind Reformen nötig? Welche Chancen und Herausforderungen ergeben sich daraus? Und welchen Mehrwert bietet eine Mitgliedschaft in der internationalen CoARA – Coalition for Advancing #ResearchAssessment?
Reposted by Robert Haase
The next @scadsai.bsky.social Meetup on October 21 will give you the chance to learn more about two highly topical fields of AI application: "Sovereign GenAI & Research Agents in Practice".
Register here, join the meetup community and share your ideas:
👉 https://scads.ai/event/meetup/
Register here, join the meetup community and share your ideas:
👉 https://scads.ai/event/meetup/
October 8, 2025 at 11:17 AM
The next @scadsai.bsky.social Meetup on October 21 will give you the chance to learn more about two highly topical fields of AI application: "Sovereign GenAI & Research Agents in Practice".
Register here, join the meetup community and share your ideas:
👉 https://scads.ai/event/meetup/
Register here, join the meetup community and share your ideas:
👉 https://scads.ai/event/meetup/
Reposted by Robert Haase
🥇Congratulations to Filippo de Bortoli from @scadsai.bsky.social, who attended the #FroCoS2025 in Reykjavík, Iceland. He won the Best Student Paper Award for a paper co-authored with @scadsai.bsky.social PI Prof. Franz Baader.
Read more about the paper: 👉 https://f.mtr.cool/yegcmotvkl
Read more about the paper: 👉 https://f.mtr.cool/yegcmotvkl
October 9, 2025 at 12:39 PM
🥇Congratulations to Filippo de Bortoli from @scadsai.bsky.social, who attended the #FroCoS2025 in Reykjavík, Iceland. He won the Best Student Paper Award for a paper co-authored with @scadsai.bsky.social PI Prof. Franz Baader.
Read more about the paper: 👉 https://f.mtr.cool/yegcmotvkl
Read more about the paper: 👉 https://f.mtr.cool/yegcmotvkl
Reposted by Robert Haase
Job alert!
We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks?
See also on the forum:
forum.image.sc/t/research-e...
We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks?
See also on the forum:
forum.image.sc/t/research-e...
Research engineer in Bioimage Analysis for the researchers of the inIdEx FORMULA
Hi all We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks? The position is in the Instit...
forum.image.sc
October 7, 2025 at 12:39 PM
Job alert!
We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks?
See also on the forum:
forum.image.sc/t/research-e...
We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks?
See also on the forum:
forum.image.sc/t/research-e...
Reposted by Robert Haase
Second, for a Mathematical Modeling Specialist - this person will consult and collaborate in projects, but also engage in training and establishing a community of practice. embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
Mathematical Modeling Specialist (Life Sciences)
EMBL Data Science Centre meets the growing demand for advanced data analysis at EMBL and ensures that biological research data at our multi-site organisation are expertly processed, integrated, annota...
embl.wd103.myworkdayjobs.com
October 8, 2025 at 7:09 AM
Second, for a Mathematical Modeling Specialist - this person will consult and collaborate in projects, but also engage in training and establishing a community of practice. embl.wd103.myworkdayjobs.com/en-US/EMBL/j...