Wayne
@fomightez.bsky.social
Wayne
~~ ~Jupyter Distinguished Contributor
~ ~ ~ http://fomightez.github.io
~ ~ ~ ~ ~ ~ I run Proteopedia's social media too ~~ ~
He/His
~~ ~Jupyter Distinguished Contributor
~ ~ ~ http://fomightez.github.io
~ ~ ~ ~ ~ ~ I run Proteopedia's social media too ~~ ~
He/His
Reposted by Wayne
🎓 Upcoming Online Course: RNA Sequencing Data with R/Bioconductor by Physalia Courses and Bioconductor Training
📅 November 3–14, 2025
Instructor: Dr Ludwig Geistlinger
👉 Register and learn more: www.physalia-courses.org/courses-work...
📅 November 3–14, 2025
Instructor: Dr Ludwig Geistlinger
👉 Register and learn more: www.physalia-courses.org/courses-work...
RNA sequencing data with R/Bioconductor
Online, 3-14 November 2025 To foster international participation, this course will be held online
www.physalia-courses.org
October 27, 2025 at 10:00 AM
🎓 Upcoming Online Course: RNA Sequencing Data with R/Bioconductor by Physalia Courses and Bioconductor Training
📅 November 3–14, 2025
Instructor: Dr Ludwig Geistlinger
👉 Register and learn more: www.physalia-courses.org/courses-work...
📅 November 3–14, 2025
Instructor: Dr Ludwig Geistlinger
👉 Register and learn more: www.physalia-courses.org/courses-work...
Reposted by Wayne
Want to help shaping the future of #Snakemake? Then participate in the Snakemake hackathon 2026 in Munich! There's still room as the maximum number of participants is not yet reached. You can register here: indico.cern.ch/e/snakemake-...
#sciworkflows #reproducibility
#sciworkflows #reproducibility
Snakemake Hackathon March 2026
We are excited to announce the Snakemake Hackathon 2026, to be held 9-13 March, 2026 at the Technical University Munich. This event will bring together passionate developers and data scientists to col...
indico.cern.ch
October 17, 2025 at 4:49 PM
Want to help shaping the future of #Snakemake? Then participate in the Snakemake hackathon 2026 in Munich! There's still room as the maximum number of participants is not yet reached. You can register here: indico.cern.ch/e/snakemake-...
#sciworkflows #reproducibility
#sciworkflows #reproducibility
Reposted by Wayne
Go from JupyterLab user to creator 🚀
At JupyterCon 2025, learn to build + publish custom extensions for real-world workflows — guided by experts in JupyterLab development.
🗓️ Nov 3 | San Diego
Details: sched.co/28H2m
Register: events.linuxfoundation.org/jupytercon/r...
At JupyterCon 2025, learn to build + publish custom extensions for real-world workflows — guided by experts in JupyterLab development.
🗓️ Nov 3 | San Diego
Details: sched.co/28H2m
Register: events.linuxfoundation.org/jupytercon/r...
October 7, 2025 at 5:09 PM
Go from JupyterLab user to creator 🚀
At JupyterCon 2025, learn to build + publish custom extensions for real-world workflows — guided by experts in JupyterLab development.
🗓️ Nov 3 | San Diego
Details: sched.co/28H2m
Register: events.linuxfoundation.org/jupytercon/r...
At JupyterCon 2025, learn to build + publish custom extensions for real-world workflows — guided by experts in JupyterLab development.
🗓️ Nov 3 | San Diego
Details: sched.co/28H2m
Register: events.linuxfoundation.org/jupytercon/r...
Reposted by Wayne
Reposted by Wayne
JupyterCon 2025 has an early-bird registration discount that ends October 3rd! Get your tickets now, and check out the schedule below
events.linuxfoundation.org/jupytercon/p...
events.linuxfoundation.org/jupytercon/p...
Schedule | LF Events
View the O3DECon 2021 Schedule & Directory.
events.linuxfoundation.org
September 15, 2025 at 4:10 PM
JupyterCon 2025 has an early-bird registration discount that ends October 3rd! Get your tickets now, and check out the schedule below
events.linuxfoundation.org/jupytercon/p...
events.linuxfoundation.org/jupytercon/p...
Reposted by Wayne
A reminder that there are two Call for Proposals out from the Jupyter Foundation!
👉 (deadline soon!) Jupyter Community Workshops: blog.jupyter.org/jupyter-comm...
👉 Jupyter Community Support funding: blog.jupyter.org/your-ideas-o...
Check them out and share the word!
👉 (deadline soon!) Jupyter Community Workshops: blog.jupyter.org/jupyter-comm...
👉 Jupyter Community Support funding: blog.jupyter.org/your-ideas-o...
Check them out and share the word!
Jupyter Community Workshops Are Back!
The Jupyter Community Building Working Group is pleased to announce that the next call for proposals for Jupyter Community Workshops is now…
blog.jupyter.org
September 3, 2025 at 6:39 PM
A reminder that there are two Call for Proposals out from the Jupyter Foundation!
👉 (deadline soon!) Jupyter Community Workshops: blog.jupyter.org/jupyter-comm...
👉 Jupyter Community Support funding: blog.jupyter.org/your-ideas-o...
Check them out and share the word!
👉 (deadline soon!) Jupyter Community Workshops: blog.jupyter.org/jupyter-comm...
👉 Jupyter Community Support funding: blog.jupyter.org/your-ideas-o...
Check them out and share the word!
Reposted by Wayne
Jupyter Community Workshops are back! Workshops will be held through February 2026.
The call for proposals is open until September 7th! Learn more and submit your proposal here:
blog.jupyter.org/jupyter-comm...
The call for proposals is open until September 7th! Learn more and submit your proposal here:
blog.jupyter.org/jupyter-comm...
Jupyter Community Workshops Are Back!
The Jupyter Community Building Working Group is pleased to announce that the next call for proposals for Jupyter Community Workshops is now…
blog.jupyter.org
August 29, 2025 at 1:16 AM
Jupyter Community Workshops are back! Workshops will be held through February 2026.
The call for proposals is open until September 7th! Learn more and submit your proposal here:
blog.jupyter.org/jupyter-comm...
The call for proposals is open until September 7th! Learn more and submit your proposal here:
blog.jupyter.org/jupyter-comm...
Reposted by Wayne
👋 JupyterLab and Jupyter Notebook users:
What's one thing you'd love to see improved in JupyterLab, Jupyter Notebook, or JupyterLite?
The team is prepping the upcoming 4.5/7.5 releases and wants to tackle some usability issues.
Drop your feedback below, this will help prioritize what gets fixed!👇
What's one thing you'd love to see improved in JupyterLab, Jupyter Notebook, or JupyterLite?
The team is prepping the upcoming 4.5/7.5 releases and wants to tackle some usability issues.
Drop your feedback below, this will help prioritize what gets fixed!👇
August 19, 2025 at 9:43 AM
👋 JupyterLab and Jupyter Notebook users:
What's one thing you'd love to see improved in JupyterLab, Jupyter Notebook, or JupyterLite?
The team is prepping the upcoming 4.5/7.5 releases and wants to tackle some usability issues.
Drop your feedback below, this will help prioritize what gets fixed!👇
What's one thing you'd love to see improved in JupyterLab, Jupyter Notebook, or JupyterLite?
The team is prepping the upcoming 4.5/7.5 releases and wants to tackle some usability issues.
Drop your feedback below, this will help prioritize what gets fixed!👇
Reposted by Wayne
🚨 the JupyterCon CFP closes on Sunday (in 2 days) at the end of the day! 🚨
Get your submissions in quickly!
events.linuxfoundation.org/jupytercon/p...
Get your submissions in quickly!
events.linuxfoundation.org/jupytercon/p...
Call For Proposals (CFP) | LF Events
The Jupyter ecosystem has transformed data science, scientific research, and education. It has shaped the way a generation of developers and scientists develop their workflows.
events.linuxfoundation.org
July 18, 2025 at 3:25 PM
🚨 the JupyterCon CFP closes on Sunday (in 2 days) at the end of the day! 🚨
Get your submissions in quickly!
events.linuxfoundation.org/jupytercon/p...
Get your submissions in quickly!
events.linuxfoundation.org/jupytercon/p...
Reposted by Wayne
🔥 We are pleased to announce the The Turing Way Fireside Chat Series on Governance. This series brings together experts and community members to explore the many dimensions of governance in research and open science. Find out more about the events at:
www.software.ac.uk/news/turing-...
www.software.ac.uk/news/turing-...
July 4, 2025 at 8:12 AM
🔥 We are pleased to announce the The Turing Way Fireside Chat Series on Governance. This series brings together experts and community members to explore the many dimensions of governance in research and open science. Find out more about the events at:
www.software.ac.uk/news/turing-...
www.software.ac.uk/news/turing-...
Reposted by Wayne
BiocPy: Facilitate Bioconductor Workflows in Python github.com/BiocPy
July 3, 2025 at 1:45 PM
BiocPy: Facilitate Bioconductor Workflows in Python github.com/BiocPy
Reposted by Wayne
For those of you who prefer R over Python — good news! 🎉
You can now try out and run R code directly right in your browser from the @jupyter.org website — all in just a couple of seconds 🚀
Huge thanks to Isabel Paredes and contributors for making this possible!
👉 jupyter.org/try
You can now try out and run R code directly right in your browser from the @jupyter.org website — all in just a couple of seconds 🚀
Huge thanks to Isabel Paredes and contributors for making this possible!
👉 jupyter.org/try
June 4, 2025 at 5:33 PM
For those of you who prefer R over Python — good news! 🎉
You can now try out and run R code directly right in your browser from the @jupyter.org website — all in just a couple of seconds 🚀
Huge thanks to Isabel Paredes and contributors for making this possible!
👉 jupyter.org/try
You can now try out and run R code directly right in your browser from the @jupyter.org website — all in just a couple of seconds 🚀
Huge thanks to Isabel Paredes and contributors for making this possible!
👉 jupyter.org/try
Reposted by Wayne
Our results finally explain the essential role of snR30 snoRNA! Check out the details in www.nature.com/articles/s41...
H/ACA snR30 snoRNP guides independent 18S rRNA subdomain formation - Nature Communications
During synthesis, modification and maturation of the ribosomal RNA, correct subdomain folding without additional guidance poses a major challenge. Here, the authors observe the snR30 H/ACA snoRNP form...
www.nature.com
May 26, 2025 at 9:29 AM
Our results finally explain the essential role of snR30 snoRNA! Check out the details in www.nature.com/articles/s41...
Reposted by Wayne
Join our Github training workshop - open to all (including people not signed up for Book Dash!)
⚒️ Learn how to use the Github platform
⚒️ Make your first Pull Request
⚒️ Find out how to contribute to The Turing Way project
📅 6 May
⏰ 5-5:30 UTC+1
forms.gle/GBrBmpbJ4DdT...
⚒️ Learn how to use the Github platform
⚒️ Make your first Pull Request
⚒️ Find out how to contribute to The Turing Way project
📅 6 May
⏰ 5-5:30 UTC+1
forms.gle/GBrBmpbJ4DdT...
The Turing Way - Github Workshop - May 2025
Date: Monday, 6 May, 15-16:30 UTC+1 (in your timezone)
The Turing Way is a community-led resource for reproducible, open, collaborative, and inclusive data science. Created by over 400 contributors, T...
forms.gle
April 14, 2025 at 5:10 PM
Join our Github training workshop - open to all (including people not signed up for Book Dash!)
⚒️ Learn how to use the Github platform
⚒️ Make your first Pull Request
⚒️ Find out how to contribute to The Turing Way project
📅 6 May
⏰ 5-5:30 UTC+1
forms.gle/GBrBmpbJ4DdT...
⚒️ Learn how to use the Github platform
⚒️ Make your first Pull Request
⚒️ Find out how to contribute to The Turing Way project
📅 6 May
⏰ 5-5:30 UTC+1
forms.gle/GBrBmpbJ4DdT...
Reposted by Wayne
JupyterCon 2025 is happening! Join us in San Diego, California, from November 3–6, 2025. CFP is open now. Learn more at bit.ly/jupytercon
JupyterCon | LF Events
Discover the future of data science with hands-on training, visionary keynotes, innovative tools, and insights from top Jupyter contributors.
bit.ly
March 31, 2025 at 9:25 PM
JupyterCon 2025 is happening! Join us in San Diego, California, from November 3–6, 2025. CFP is open now. Learn more at bit.ly/jupytercon
Reposted by Wayne
JupyterLab 4.4.0b1 and Notebook 7.4.0b1 are available for testing 🎉
- improved code console
- settings import/export
- better real time collaboration
- workspace indicator
- kernel subshells
Please test:
pip install --pre 'jupyterlab>=4.4.0b1'
or
pip install --pre 'notebook>=7.4.0b1'
- improved code console
- settings import/export
- better real time collaboration
- workspace indicator
- kernel subshells
Please test:
pip install --pre 'jupyterlab>=4.4.0b1'
or
pip install --pre 'notebook>=7.4.0b1'
March 14, 2025 at 9:49 AM
JupyterLab 4.4.0b1 and Notebook 7.4.0b1 are available for testing 🎉
- improved code console
- settings import/export
- better real time collaboration
- workspace indicator
- kernel subshells
Please test:
pip install --pre 'jupyterlab>=4.4.0b1'
or
pip install --pre 'notebook>=7.4.0b1'
- improved code console
- settings import/export
- better real time collaboration
- workspace indicator
- kernel subshells
Please test:
pip install --pre 'jupyterlab>=4.4.0b1'
or
pip install --pre 'notebook>=7.4.0b1'
Reposted by Wayne
Reposted by Wayne
Pythonistas, if you haven't already done this, give it a try! Run this in your terminal:
uvx textual-demo
Requires UV docs.astral.sh/uv/
uvx textual-demo
Requires UV docs.astral.sh/uv/
February 26, 2025 at 9:10 PM
Pythonistas, if you haven't already done this, give it a try! Run this in your terminal:
uvx textual-demo
Requires UV docs.astral.sh/uv/
uvx textual-demo
Requires UV docs.astral.sh/uv/
Reposted by Wayne
Announcing JupyterGIS 🌍 🌐 🎉
Real-time collaboration for #GIS workflows with #Jupyter and #QGIS
@qgis.fosstodon.org.ap.brid.gy @jupyter.org
blog.jupyter.org/real-time-co...
Real-time collaboration for #GIS workflows with #Jupyter and #QGIS
@qgis.fosstodon.org.ap.brid.gy @jupyter.org
blog.jupyter.org/real-time-co...
Real-time collaboration and collaborative editing for GIS workflows with Jupyter and QGIS
The QGIS open-source project is a cornerstone in the geosciences ecosystem, providing robust tools for spatial data analysis and…
blog.jupyter.org
February 27, 2025 at 9:54 AM
Announcing JupyterGIS 🌍 🌐 🎉
Real-time collaboration for #GIS workflows with #Jupyter and #QGIS
@qgis.fosstodon.org.ap.brid.gy @jupyter.org
blog.jupyter.org/real-time-co...
Real-time collaboration for #GIS workflows with #Jupyter and #QGIS
@qgis.fosstodon.org.ap.brid.gy @jupyter.org
blog.jupyter.org/real-time-co...
Reposted by Wayne
The PR improving the JupyterLab code consoles has been merged, and is now available in the latest JupyterLab, Notebook and JupyterLite pre-releases!
➡️ pip install --pre jupyterlab notebook
💡We're working on making the new options available in the JupyterLite REPL, stay tuned! 💡
➡️ pip install --pre jupyterlab notebook
💡We're working on making the new options available in the JupyterLite REPL, stay tuned! 💡
February 6, 2025 at 9:19 AM
The PR improving the JupyterLab code consoles has been merged, and is now available in the latest JupyterLab, Notebook and JupyterLite pre-releases!
➡️ pip install --pre jupyterlab notebook
💡We're working on making the new options available in the JupyterLite REPL, stay tuned! 💡
➡️ pip install --pre jupyterlab notebook
💡We're working on making the new options available in the JupyterLite REPL, stay tuned! 💡
Reposted by Wayne
2i2c has officially become part of the mybinder.org federation, introducing a new, cost-effective, and faster approach. We hope to make it easier for more people to join the federation by contributing a single-node BinderHub at 2i2c.mybinder.org.
More in our blog: https://2i2c.org/blog/2025/binde…
More in our blog: https://2i2c.org/blog/2025/binde…
February 5, 2025 at 8:45 AM
2i2c has officially become part of the mybinder.org federation, introducing a new, cost-effective, and faster approach. We hope to make it easier for more people to join the federation by contributing a single-node BinderHub at 2i2c.mybinder.org.
More in our blog: https://2i2c.org/blog/2025/binde…
More in our blog: https://2i2c.org/blog/2025/binde…
Reposted by Wayne
U of A DataLab workshops: week of Feb 3rd. 2025.
Want to improve your skills with AI/ML tools, foundation models, and methods? Join our weekly workshops at the U of A DataLab.
#AI #ML #UArizona #UArizonaDataLab #DataScience #GenAI #Bioinformatics
ua-datalab.github.io/events/
Want to improve your skills with AI/ML tools, foundation models, and methods? Join our weekly workshops at the U of A DataLab.
#AI #ML #UArizona #UArizonaDataLab #DataScience #GenAI #Bioinformatics
ua-datalab.github.io/events/
Events Calendar - University of Arizona DataLab
The University of Arizona DataLab supports multiple ways to improve research, provides career opportunities, facilitates industry partnerships, and encourage innovation and entrepreneurship at our Uni...
ua-datalab.github.io
January 31, 2025 at 5:26 PM
U of A DataLab workshops: week of Feb 3rd. 2025.
Want to improve your skills with AI/ML tools, foundation models, and methods? Join our weekly workshops at the U of A DataLab.
#AI #ML #UArizona #UArizonaDataLab #DataScience #GenAI #Bioinformatics
ua-datalab.github.io/events/
Want to improve your skills with AI/ML tools, foundation models, and methods? Join our weekly workshops at the U of A DataLab.
#AI #ML #UArizona #UArizonaDataLab #DataScience #GenAI #Bioinformatics
ua-datalab.github.io/events/
Reposted by Wayne
I'm excited to get Binder / JupyterHub launch button functionality back into Jupyter Book 2!
Gets a little better every day!
github.com/jupyter-book...
Gets a little better every day!
github.com/jupyter-book...
🚀 Prototyping launch buttons for JupyterHub & MyBinder by agoose77 · Pull Request #503 · jupyter-book/myst-theme
To close jupyter-book/mystmd#1643 and jupyter-book/mystmd#1644, this PR prototypes a launch UI. We will want to move things around in time, but this PR is designed to start design conversations.
Th...
github.com
November 27, 2024 at 9:51 PM
I'm excited to get Binder / JupyterHub launch button functionality back into Jupyter Book 2!
Gets a little better every day!
github.com/jupyter-book...
Gets a little better every day!
github.com/jupyter-book...
Reposted by Wayne
Yeast ribosomes adapt to glucose starvation by tethering to mitochondria in hibernation. Prolonged depletion halts protein synthesis and remodels ribosomes to create protective ribosome arrays. #ribosomes #RNASky #RNABiology #translation rdcu.be/d1xqj
Ribosomes hibernate on mitochondria during cellular stress
Nature Communications - Cells adapt to low glucose by halting protein synthesis and altering organelle shape. Here the authors showed that hibernating ribosomes tether to mitochondria and form...
rdcu.be
November 26, 2024 at 4:21 PM
Yeast ribosomes adapt to glucose starvation by tethering to mitochondria in hibernation. Prolonged depletion halts protein synthesis and remodels ribosomes to create protective ribosome arrays. #ribosomes #RNASky #RNABiology #translation rdcu.be/d1xqj
Reposted by Wayne
New on BioRxiv: We report a new, endogenous molecular clock in unmodified human cells and tissues. It is ticking away right now in almost every cell in your body.
Paper here: www.biorxiv.org/content/10.1...
1/
Paper here: www.biorxiv.org/content/10.1...
1/
November 20, 2024 at 2:55 PM
New on BioRxiv: We report a new, endogenous molecular clock in unmodified human cells and tissues. It is ticking away right now in almost every cell in your body.
Paper here: www.biorxiv.org/content/10.1...
1/
Paper here: www.biorxiv.org/content/10.1...
1/