Egon Willighagen
@egonw.social.edu.nl.ap.brid.gy
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
🌉 bridged from ⁂ https://social.edu.nl/@egonw, follow @ap.brid.gy to interact
🌉 bridged from ⁂ https://social.edu.nl/@egonw, follow @ap.brid.gy to interact
"A noteworthy finding is that the identities of many chemicals remain publicly unknown because they are claimed as confidential (over 50 000) or ambiguously described (up to 70 000)." https://pubs.acs.org/doi/10.1021/acs.est.9b06379
December 8, 2025 at 10:13 AM
"A noteworthy finding is that the identities of many chemicals remain publicly unknown because they are claimed as confidential (over 50 000) or ambiguously described (up to 70 000)." https://pubs.acs.org/doi/10.1021/acs.est.9b06379
Reposted by Egon Willighagen
PCI Statistics and Machine Learning (@PCI_StatML) is now open for submissions!! https://statml.peercommunityin.org/
For an updated list of all the thematic PCIs, visit https://peercommunityin.org/current-pcis/
For an updated list of all the thematic PCIs, visit https://peercommunityin.org/current-pcis/
December 8, 2025 at 8:54 AM
PCI Statistics and Machine Learning (@PCI_StatML) is now open for submissions!! https://statml.peercommunityin.org/
For an updated list of all the thematic PCIs, visit https://peercommunityin.org/current-pcis/
For an updated list of all the thematic PCIs, visit https://peercommunityin.org/current-pcis/
new blog: "Rescuing Scholia: will we make it in time?" https://doi.org/10.59350/yh369-rr787 https://chem-bla-ics.linkedchemistry.info/2025/12/08/rescuing-scholia.html
"What started out in 2016 on Twitter became a (small) award winning decade long collaborative project. Unfortunately, the future […]
"What started out in 2016 on Twitter became a (small) award winning decade long collaborative project. Unfortunately, the future […]
Original post on social.edu.nl
social.edu.nl
December 8, 2025 at 7:28 AM
new blog: "Rescuing Scholia: will we make it in time?" https://doi.org/10.59350/yh369-rr787 https://chem-bla-ics.linkedchemistry.info/2025/12/08/rescuing-scholia.html
"What started out in 2016 on Twitter became a (small) award winning decade long collaborative project. Unfortunately, the future […]
"What started out in 2016 on Twitter became a (small) award winning decade long collaborative project. Unfortunately, the future […]
"The first rule of research integrity is always cite your sources."
From "Reference checks in Oversight" https://doi.org/10.59350/7ax4r-hk815
Nice blog post about citation practices, retractions, and citation networks.
From "Reference checks in Oversight" https://doi.org/10.59350/7ax4r-hk815
Nice blog post about citation practices, retractions, and citation networks.
December 8, 2025 at 6:21 AM
"The first rule of research integrity is always cite your sources."
From "Reference checks in Oversight" https://doi.org/10.59350/7ax4r-hk815
Nice blog post about citation practices, retractions, and citation networks.
From "Reference checks in Oversight" https://doi.org/10.59350/7ax4r-hk815
Nice blog post about citation practices, retractions, and citation networks.
Reposted by Egon Willighagen
got GPML files on @github? Validate them with this action:
jobs:
test:
name: "Validate XSD files"
runs-on: ubuntu-latest
steps:
- name: Checkout
uses: actions/checkout@v6
- name: Validate XSD files conform to the specs
uses: phpcsstandards/xmllint-validate@v1
with:
pattern: "pathways/*.gpml" […]
jobs:
test:
name: "Validate XSD files"
runs-on: ubuntu-latest
steps:
- name: Checkout
uses: actions/checkout@v6
- name: Validate XSD files conform to the specs
uses: phpcsstandards/xmllint-validate@v1
with:
pattern: "pathways/*.gpml" […]
Original post on fosstodon.org
fosstodon.org
December 7, 2025 at 5:25 AM
got GPML files on @github? Validate them with this action:
jobs:
test:
name: "Validate XSD files"
runs-on: ubuntu-latest
steps:
- name: Checkout
uses: actions/checkout@v6
- name: Validate XSD files conform to the specs
uses: phpcsstandards/xmllint-validate@v1
with:
pattern: "pathways/*.gpml" […]
jobs:
test:
name: "Validate XSD files"
runs-on: ubuntu-latest
steps:
- name: Checkout
uses: actions/checkout@v6
- name: Validate XSD files conform to the specs
uses: phpcsstandards/xmllint-validate@v1
with:
pattern: "pathways/*.gpml" […]
Reposted by Egon Willighagen
Surf zoekt zo’n tweeduizend docenten, onderzoekers en andere medewerkers die Nextcloud willen uitproberen, een serieus Europees alternatief voor Microsoft. dub.uu.nl/nl/nieuws/su...
Surf zoekt proefkonijnen om alternatief Microsoft te testen
Surf zoekt zo’n tweeduizend docenten, onderzoekers en andere medewerkers die Nextcloud willen uitproberen, een serieus Europees alternatief voor Microsoft.
dub.uu.nl
November 25, 2025 at 3:06 PM
Surf zoekt zo’n tweeduizend docenten, onderzoekers en andere medewerkers die Nextcloud willen uitproberen, een serieus Europees alternatief voor Microsoft. dub.uu.nl/nl/nieuws/su...
Reposted by Egon Willighagen
@egonw a few days ago, I updated bumped the #bioconda package of r-wikipathways to v1.30 . Thank you for this wonderful package!
Today, after quite some tinkering, I managed to overly differential expression results. This is not stable code, yet. The […]
[Original post on fediscience.org]
Today, after quite some tinkering, I managed to overly differential expression results. This is not stable code, yet. The […]
[Original post on fediscience.org]
December 5, 2025 at 6:10 PM
@egonw a few days ago, I updated bumped the #bioconda package of r-wikipathways to v1.30 . Thank you for this wonderful package!
Today, after quite some tinkering, I managed to overly differential expression results. This is not stable code, yet. The […]
[Original post on fediscience.org]
Today, after quite some tinkering, I managed to overly differential expression results. This is not stable code, yet. The […]
[Original post on fediscience.org]
Reposted by Egon Willighagen
Don’t forget to register for this month’s LIPID MAPS #webinar with James Olzmann, titled ‘Cellular lipid homeostasis: From lipid droplets to ferroptosis’. Register now: zoom.us/webinar/regi...
December 5, 2025 at 4:16 PM
Don’t forget to register for this month’s LIPID MAPS #webinar with James Olzmann, titled ‘Cellular lipid homeostasis: From lipid droplets to ferroptosis’. Register now: zoom.us/webinar/regi...
Reposted by Egon Willighagen
RE: https://social.edu.nl/@tgx_um/115645028833529913
on Monday we have a go/no-go and we really want to go
So, are you considering sign up before Sunday evening!
#ontologies #linkeddata #sparql
on Monday we have a go/no-go and we really want to go
So, are you considering sign up before Sunday evening!
#ontologies #linkeddata #sparql
🚀 BioSB course "Knowledge Graphs in the Life Sciences” 🚀
Don't miss this exciting opportunity for Life Sciences researchers and data enthusiasts. In just 9 weeks, BioSB will host this course: https://www.dtls.nl/courses/knowledge-graphs-in-the-life-sciences-2026/
📅 January 5–9, 2025
🗺️ […]
Don't miss this exciting opportunity for Life Sciences researchers and data enthusiasts. In just 9 weeks, BioSB will host this course: https://www.dtls.nl/courses/knowledge-graphs-in-the-life-sciences-2026/
📅 January 5–9, 2025
🗺️ […]
Original post on social.edu.nl
social.edu.nl
December 4, 2025 at 3:29 PM
RE: https://social.edu.nl/@tgx_um/115645028833529913
on Monday we have a go/no-go and we really want to go
So, are you considering sign up before Sunday evening!
#ontologies #linkeddata #sparql
on Monday we have a go/no-go and we really want to go
So, are you considering sign up before Sunday evening!
#ontologies #linkeddata #sparql
Reposted by Egon Willighagen
There’s still time to register for TODAY’s FREE online #beilsteintalk “The value of data-sharing for reaction discovery and development” with Simon Coles and Sally Bloodworth, University of Southampton.
📅 Dec 4, 2025 🕒 3–4 pm CET
🔗 […]
[Original post on hessen.social]
📅 Dec 4, 2025 🕒 3–4 pm CET
🔗 […]
[Original post on hessen.social]
December 4, 2025 at 9:01 AM
There’s still time to register for TODAY’s FREE online #beilsteintalk “The value of data-sharing for reaction discovery and development” with Simon Coles and Sally Bloodworth, University of Southampton.
📅 Dec 4, 2025 🕒 3–4 pm CET
🔗 […]
[Original post on hessen.social]
📅 Dec 4, 2025 🕒 3–4 pm CET
🔗 […]
[Original post on hessen.social]
Reposted by Egon Willighagen
‼️ La invasión de satélites como Starlink también arruinará las imágenes del Hubble y otros telescopios espaciales www.eldiario.es/1_c38a03?utm...
La invasión de satélites como Starlink también arruinará las imágenes del Hubble y otros telescopios espaciales
Algunos telescopios en órbita baja verán más del 96% de sus imágenes dañadas por la superpoblación de satélites, que ha aumentado de 2.000 a 15.000 desde 2019
www.eldiario.es
December 3, 2025 at 4:00 PM
‼️ La invasión de satélites como Starlink también arruinará las imágenes del Hubble y otros telescopios espaciales www.eldiario.es/1_c38a03?utm...
getting ready for (already) the 7th #vhp4safety #hackathon!
VHP4Safety is NWO-funded research project, co-creating a virtual human (platform) to host digital twins, to support toxicology research and risk assessment. Why? to replace as much as possible, if not all, animal testing.
And the […]
VHP4Safety is NWO-funded research project, co-creating a virtual human (platform) to host digital twins, to support toxicology research and risk assessment. Why? to replace as much as possible, if not all, animal testing.
And the […]
Original post on social.edu.nl
social.edu.nl
December 2, 2025 at 8:32 AM
getting ready for (already) the 7th #vhp4safety #hackathon!
VHP4Safety is NWO-funded research project, co-creating a virtual human (platform) to host digital twins, to support toxicology research and risk assessment. Why? to replace as much as possible, if not all, animal testing.
And the […]
VHP4Safety is NWO-funded research project, co-creating a virtual human (platform) to host digital twins, to support toxicology research and risk assessment. Why? to replace as much as possible, if not all, animal testing.
And the […]
Reposted by Egon Willighagen
NUTRIM Open Science: "In our series on open science, this edition features Mireille Sthijns and Cynthia Ly, highlighting their contributions to our community and their dedication to transparency and accessibility—not only for fellow researchers but for society at large." […]
Original post on social.edu.nl
social.edu.nl
December 1, 2025 at 12:40 PM
NUTRIM Open Science: "In our series on open science, this edition features Mireille Sthijns and Cynthia Ly, highlighting their contributions to our community and their dedication to transparency and accessibility—not only for fellow researchers but for society at large." […]
Reposted by Egon Willighagen
🚀 BioSB course "Knowledge Graphs in the Life Sciences” 🚀
Don't miss this exciting opportunity for Life Sciences researchers and data enthusiasts. In just 9 weeks, BioSB will host this course: https://www.dtls.nl/courses/knowledge-graphs-in-the-life-sciences-2026/
📅 January 5–9, 2025
🗺️ […]
Don't miss this exciting opportunity for Life Sciences researchers and data enthusiasts. In just 9 weeks, BioSB will host this course: https://www.dtls.nl/courses/knowledge-graphs-in-the-life-sciences-2026/
📅 January 5–9, 2025
🗺️ […]
Original post on social.edu.nl
social.edu.nl
December 1, 2025 at 3:32 PM
🚀 BioSB course "Knowledge Graphs in the Life Sciences” 🚀
Don't miss this exciting opportunity for Life Sciences researchers and data enthusiasts. In just 9 weeks, BioSB will host this course: https://www.dtls.nl/courses/knowledge-graphs-in-the-life-sciences-2026/
📅 January 5–9, 2025
🗺️ […]
Don't miss this exciting opportunity for Life Sciences researchers and data enthusiasts. In just 9 weeks, BioSB will host this course: https://www.dtls.nl/courses/knowledge-graphs-in-the-life-sciences-2026/
📅 January 5–9, 2025
🗺️ […]
Reposted by Egon Willighagen
new blog: "WikiPathways curation reports on profile pages" https://doi.org/10.59350/s7vw2-r7y02 https://chem-bla-ics.linkedchemistry.info/2025/11/30/wikipathways-curation-reports-on-profile-pages.html
#bioinformatics #cheminformatics #curation
#bioinformatics #cheminformatics #curation
November 30, 2025 at 1:55 PM
new blog: "WikiPathways curation reports on profile pages" https://doi.org/10.59350/s7vw2-r7y02 https://chem-bla-ics.linkedchemistry.info/2025/11/30/wikipathways-curation-reports-on-profile-pages.html
#bioinformatics #cheminformatics #curation
#bioinformatics #cheminformatics #curation
Reposted by Egon Willighagen
Chernobyl Fungus Appears to Have Evolved an Incredible Ability
https://www.sciencealert.com/chernobyl-fungus-appears-to-have-evolved-an-incredible-ability
That fungus is called Cladosporium sphaerospermum, and some scientists think its dark pigment – melanin – may allow it to harness ionizing […]
https://www.sciencealert.com/chernobyl-fungus-appears-to-have-evolved-an-incredible-ability
That fungus is called Cladosporium sphaerospermum, and some scientists think its dark pigment – melanin – may allow it to harness ionizing […]
Original post on mastodon.scot
mastodon.scot
November 30, 2025 at 1:20 PM
Chernobyl Fungus Appears to Have Evolved an Incredible Ability
https://www.sciencealert.com/chernobyl-fungus-appears-to-have-evolved-an-incredible-ability
That fungus is called Cladosporium sphaerospermum, and some scientists think its dark pigment – melanin – may allow it to harness ionizing […]
https://www.sciencealert.com/chernobyl-fungus-appears-to-have-evolved-an-incredible-ability
That fungus is called Cladosporium sphaerospermum, and some scientists think its dark pigment – melanin – may allow it to harness ionizing […]
new blog: "WikiPathways curation reports on profile pages" https://doi.org/10.59350/s7vw2-r7y02 https://chem-bla-ics.linkedchemistry.info/2025/11/30/wikipathways-curation-reports-on-profile-pages.html
#bioinformatics #cheminformatics #curation
#bioinformatics #cheminformatics #curation
November 30, 2025 at 1:55 PM
new blog: "WikiPathways curation reports on profile pages" https://doi.org/10.59350/s7vw2-r7y02 https://chem-bla-ics.linkedchemistry.info/2025/11/30/wikipathways-curation-reports-on-profile-pages.html
#bioinformatics #cheminformatics #curation
#bioinformatics #cheminformatics #curation
@wikipathways still has a good number (200 to 250) pathways that do not have a single reference (which does not mean no references were used): https://www.wikipathways.org/wikipathways-collection/index2#at-least-one-reference
I think we need some gamification here... a few tools that take the […]
I think we need some gamification here... a few tools that take the […]
Original post on social.edu.nl
social.edu.nl
November 30, 2025 at 8:35 AM
@wikipathways still has a good number (200 to 250) pathways that do not have a single reference (which does not mean no references were used): https://www.wikipathways.org/wikipathways-collection/index2#at-least-one-reference
I think we need some gamification here... a few tools that take the […]
I think we need some gamification here... a few tools that take the […]
TIL I actually did (well, experimented with) preregistration 10 years go: https://web.archive.org/web/20150119044816/http://onsnetwork.org/chemblaics/
2015: "Open Notebook Science] Network supports researchers of all disciplines. We believe the world can benefit from access to all knowledge. If […]
2015: "Open Notebook Science] Network supports researchers of all disciplines. We believe the world can benefit from access to all knowledge. If […]
Original post on social.edu.nl
social.edu.nl
November 29, 2025 at 3:47 PM
TIL I actually did (well, experimented with) preregistration 10 years go: https://web.archive.org/web/20150119044816/http://onsnetwork.org/chemblaics/
2015: "Open Notebook Science] Network supports researchers of all disciplines. We believe the world can benefit from access to all knowledge. If […]
2015: "Open Notebook Science] Network supports researchers of all disciplines. We believe the world can benefit from access to all knowledge. If […]
oh, nice to see the eNanoMapper database paper (https://doi.org/10.3762/bjnano.6.165) got a mention in Wikipedia :) https://acs.altmetric.com/details/4332183/wikipedia
The eNanoMapper database for nanomaterial safety information
Beilstein Journal of Nanotechnology
www.beilstein-journals.org
November 29, 2025 at 9:40 AM
oh, nice to see the eNanoMapper database paper (https://doi.org/10.3762/bjnano.6.165) got a mention in Wikipedia :) https://acs.altmetric.com/details/4332183/wikipedia
Reposted by Egon Willighagen
The submission deadline for the ICCS Collection in the Journal of Cheminformatics will be extended to March 1. We currently have four papers under review and expect at 2 more submissions.
https://link.springer.com/collections/jcfcedbfda
#cheminformatics #iccs2025
https://link.springer.com/collections/jcfcedbfda
#cheminformatics #iccs2025
Research from the 13th International Conference on Chemical Structures
The 13th International Conference on Chemical Structures (ICCS 2025) will take place on June 1-5, 2025, in Noordwijkerhout, The Netherlands, where it has been ...
link.springer.com
November 29, 2025 at 9:09 AM
The submission deadline for the ICCS Collection in the Journal of Cheminformatics will be extended to March 1. We currently have four papers under review and expect at 2 more submissions.
https://link.springer.com/collections/jcfcedbfda
#cheminformatics #iccs2025
https://link.springer.com/collections/jcfcedbfda
#cheminformatics #iccs2025
Reposted by Egon Willighagen
I'm wondering: If a published paper mentions that a study was approved by the ethics committee of University X, number XXXX, is there a way to find (and read) this ethics approval?
#metascience #ethics #academia
#metascience #ethics #academia
November 26, 2025 at 4:23 PM
I'm wondering: If a published paper mentions that a study was approved by the ethics committee of University X, number XXXX, is there a way to find (and read) this ethics approval?
#metascience #ethics #academia
#metascience #ethics #academia
Reposted by Egon Willighagen
Reposted by Egon Willighagen
"‘This is censorship.’ Conference requires abstracts to comply with Trump anti-DEI order."
https://www.science.org/content/article/censorship-conference-requires-abstracts-comply-trump-anti-dei-order
"Planetary scientists planning to attend a prominent conference may soon face a difficult […]
https://www.science.org/content/article/censorship-conference-requires-abstracts-comply-trump-anti-dei-order
"Planetary scientists planning to attend a prominent conference may soon face a difficult […]
Original post on fediscience.org
fediscience.org
November 25, 2025 at 2:03 PM
"‘This is censorship.’ Conference requires abstracts to comply with Trump anti-DEI order."
https://www.science.org/content/article/censorship-conference-requires-abstracts-comply-trump-anti-dei-order
"Planetary scientists planning to attend a prominent conference may soon face a difficult […]
https://www.science.org/content/article/censorship-conference-requires-abstracts-comply-trump-anti-dei-order
"Planetary scientists planning to attend a prominent conference may soon face a difficult […]
Reposted by Egon Willighagen
On 15 December 2025, the Open Science Community Maastricht (OSCM) is hosting a hands-on workshop by Roman Briker:
“Pre-registration: Why, How, and Where?”
Pre-registration is one of the key steps toward making research more transparent, trustworthy, and […]
[Original post on social.edu.nl]
“Pre-registration: Why, How, and Where?”
Pre-registration is one of the key steps toward making research more transparent, trustworthy, and […]
[Original post on social.edu.nl]
November 24, 2025 at 2:00 PM
On 15 December 2025, the Open Science Community Maastricht (OSCM) is hosting a hands-on workshop by Roman Briker:
“Pre-registration: Why, How, and Where?”
Pre-registration is one of the key steps toward making research more transparent, trustworthy, and […]
[Original post on social.edu.nl]
“Pre-registration: Why, How, and Where?”
Pre-registration is one of the key steps toward making research more transparent, trustworthy, and […]
[Original post on social.edu.nl]