I reanalyzed public data from the human SCG to uncover neuroimmune signatures during cardiac disease.🧬🖥️
This was an awesome learning experience and I am excited use everything I learned for new project ideas :D.
#Bioinformatics
My proposal: 'ArmoredPhage' 🛡️
My goal: Engineer a Thermostable MS2 Bacteriophage Using Protein Design Techniques.
Check it out:
djosergenomics.github.io/Armored-Phag...
#HTGAA #synbio #AlphaFold #proteindesign
My proposal: 'ArmoredPhage' 🛡️
My goal: Engineer a Thermostable MS2 Bacteriophage Using Protein Design Techniques.
Check it out:
djosergenomics.github.io/Armored-Phag...
#HTGAA #synbio #AlphaFold #proteindesign
I was always intimidated by 3D protein models in papers & never thought I'd understand them one day!
Today, I loaded a PDB file into PyMOL, saw the alpha helices & beta sheets of my Tyrosinase enzyme.
This is so cool. 🚀
#HTGAA #proteindesign
I was always intimidated by 3D protein models in papers & never thought I'd understand them one day!
Today, I loaded a PDB file into PyMOL, saw the alpha helices & beta sheets of my Tyrosinase enzyme.
This is so cool. 🚀
#HTGAA #proteindesign
I wrote a script to program a virtual Opentrons robot to draw my Djoser Genomics pyramid. It simulates robots pipetting 100+ dots of fluorescent E.coli because manually it is slow & error-prone.
#HTGAA #synbio #Opentrons #automation #bioinformatics
I wrote a script to program a virtual Opentrons robot to draw my Djoser Genomics pyramid. It simulates robots pipetting 100+ dots of fluorescent E.coli because manually it is slow & error-prone.
#HTGAA #synbio #Opentrons #automation #bioinformatics
I just did the Bio Bootcamp, & i really loved the interactive sessions on Benchling and Opentrons.
Super Excited for more!
#SyntheticBiology #Bioengineering #MIT #HTGAA
I just did the Bio Bootcamp, & i really loved the interactive sessions on Benchling and Opentrons.
Super Excited for more!
#SyntheticBiology #Bioengineering #MIT #HTGAA
I believe it holds incredible potential & innovation for the future if used correctly
Got any tips or resources? :D
#SyntheticBiology #Bioengineering
I believe it holds incredible potential & innovation for the future if used correctly
Got any tips or resources? :D
#SyntheticBiology #Bioengineering
The target is a space where I can document and share my thoughts, experiences, dreams, & struggles as I navigate through bioinformatics & computational biology.
I will also share snippets from it here to be able to engage with others and learn more.
The target is a space where I can document and share my thoughts, experiences, dreams, & struggles as I navigate through bioinformatics & computational biology.
I will also share snippets from it here to be able to engage with others and learn more.
I've got some new projects and ideas that I'm excited about, so stay tuned! :D
I've got some new projects and ideas that I'm excited about, so stay tuned! :D
From starting Djoser Genomics, Learning and Exploring Various Projects, to publishing my first preprint and creating the Bulk RNAseq Tutorial Codex!
Thank you for being part of this journey so far. Here’s to Year Two. 🚀
#Bioinformatics #DjoserGenomics
From starting Djoser Genomics, Learning and Exploring Various Projects, to publishing my first preprint and creating the Bulk RNAseq Tutorial Codex!
Thank you for being part of this journey so far. Here’s to Year Two. 🚀
#Bioinformatics #DjoserGenomics
From dataset discovery all the way to enrichment analyses
Every scroll 📜 is now available, covering alignment, quantification, DEGs, visualization & everything in between
The Codex is yours to explore ✨
#RNAseq #Bioinformatics #scicomm
A step-by-step series where I guide you through real transcriptomics analysis, one scroll at a time.
Check out the blog post and follow the codex 👉 djosergenomics.github.io/Bulk-RNAseq-...
#Bioinformatics #RNAseq #scicomm
From dataset discovery all the way to enrichment analyses
Every scroll 📜 is now available, covering alignment, quantification, DEGs, visualization & everything in between
The Codex is yours to explore ✨
#RNAseq #Bioinformatics #scicomm
Now ‘AK3’ has been detected overseas
Our recent study shows how it evolved & how #Genomics can help reduce the impact of the next ‘superbug’
#AMR is an issue for everyone
#SciComm
🖥️🧬💻
#AcademicSky
#MicroSky
🧪🧫🦠
The Grand Finale, we dive into Gene set Enrichment Analysis (GSEA), why we do it, how we do it and how to visualize and interpret it.
Check it out: djosergenomics.github.io/Scroll-8-Djo...
#bioinformatics #RNAseq #scicomm
The Grand Finale, we dive into Gene set Enrichment Analysis (GSEA), why we do it, how we do it and how to visualize and interpret it.
Check it out: djosergenomics.github.io/Scroll-8-Djo...
#bioinformatics #RNAseq #scicomm
Here, We identify Trends among our DEGs using Functional (GO) and Pathway (KEGG) Enrichment Analysis!
Check it out: djosergenomics.github.io/Scroll-7-Thu...
#bioinformatics #RNAseq #scicomm
Here, We identify Trends among our DEGs using Functional (GO) and Pathway (KEGG) Enrichment Analysis!
Check it out: djosergenomics.github.io/Scroll-7-Thu...
#bioinformatics #RNAseq #scicomm
We dive into Visualizations!
MA, PCA, Volcano Plots and Heatmaps!
Check it out: djosergenomics.github.io/Scroll-6-Ram...
#bioinformatics #RNAseq #scicomm
We dive into Visualizations!
MA, PCA, Volcano Plots and Heatmaps!
Check it out: djosergenomics.github.io/Scroll-6-Ram...
#bioinformatics #RNAseq #scicomm
We dive into Differential expression analysis (DEA), using DESeq2, and how to interpret the findings
Check it out: djosergenomics.github.io/Scroll-5-Men...
#bioinformatics #RNAseq #scicomm
We dive into Differential expression analysis (DEA), using DESeq2, and how to interpret the findings
Check it out: djosergenomics.github.io/Scroll-5-Men...
#bioinformatics #RNAseq #scicomm
A: Lots of interesting and useful things! Read our blog to find out what they are:
www.fiosgenomics.com/plant-metabo...
#metabolomics #plantmetabolomics #metabolomicsanalysis #bioinformatics
A: Lots of interesting and useful things! Read our blog to find out what they are:
www.fiosgenomics.com/plant-metabo...
#metabolomics #plantmetabolomics #metabolomicsanalysis #bioinformatics
We step into the next stage of our RNAseq journey!
Importing Kallisto results into R, linking them to gene annotations, & building a strong foundation for downstream analysis
Here: djosergenomics.github.io/Scroll-4-Kha...
#bioinformatics #RNAseq #scicomm
We step into the next stage of our RNAseq journey!
Importing Kallisto results into R, linking them to gene annotations, & building a strong foundation for downstream analysis
Here: djosergenomics.github.io/Scroll-4-Kha...
#bioinformatics #RNAseq #scicomm
⚒️ Guided by King Khufu, we pseudoalign our reads using Kallisto — fast, efficient, and accurate.
🌐 Full tutorial + cultural spotlight:
📜 djosergenomics.github.io/Scroll-3-Khu...
#RNAseq #bioinformatics #scicomm
⚒️ Guided by King Khufu, we pseudoalign our reads using Kallisto — fast, efficient, and accurate.
🌐 Full tutorial + cultural spotlight:
📜 djosergenomics.github.io/Scroll-3-Khu...
#RNAseq #bioinformatics #scicomm
We dive into RNA-seq Quality Control with FASTQC — guided by Hesy-Ra, the first known dentist & physician in history.
🧪 Read here: djosergenomics.github.io/Scroll-2-Hes...
#bioinformatics #RNAseq #scicomm
We dive into RNA-seq Quality Control with FASTQC — guided by Hesy-Ra, the first known dentist & physician in history.
🧪 Read here: djosergenomics.github.io/Scroll-2-Hes...
#bioinformatics #RNAseq #scicomm
The Original Step Pyramid that inspired our logo was designed by Imhotep — the same ancient figure featured in Scroll 1 of our Bulk RNAseq Tutorial Codex.
Dive in Now ↓
#RNAseq #Bioinformatics #SciComm
We start by collecting real RNA-seq data from ENA using Google Colab.
Inspired by Imhotep - ancient Egypt’s architect of the Pyramid of Djoser.
📜 Check it out: djosergenomics.github.io/Scroll-1-Imh...
#bioinformatics #RNAseq
The Original Step Pyramid that inspired our logo was designed by Imhotep — the same ancient figure featured in Scroll 1 of our Bulk RNAseq Tutorial Codex.
Dive in Now ↓
#RNAseq #Bioinformatics #SciComm
We start by collecting real RNA-seq data from ENA using Google Colab.
Inspired by Imhotep - ancient Egypt’s architect of the Pyramid of Djoser.
📜 Check it out: djosergenomics.github.io/Scroll-1-Imh...
#bioinformatics #RNAseq
We start by collecting real RNA-seq data from ENA using Google Colab.
Inspired by Imhotep - ancient Egypt’s architect of the Pyramid of Djoser.
📜 Check it out: djosergenomics.github.io/Scroll-1-Imh...
#bioinformatics #RNAseq
A step-by-step series where I guide you through real transcriptomics analysis, one scroll at a time.
Check out the blog post and follow the codex 👉 djosergenomics.github.io/Bulk-RNAseq-...
#Bioinformatics #RNAseq #scicomm
A step-by-step series where I guide you through real transcriptomics analysis, one scroll at a time.
Check out the blog post and follow the codex 👉 djosergenomics.github.io/Bulk-RNAseq-...
#Bioinformatics #RNAseq #scicomm
I'm also planning to theme it around ancient Egypt just like Djoser ;D
So stay tuned!
#Bioinfomatics #RNAseq
I'm also planning to theme it around ancient Egypt just like Djoser ;D
So stay tuned!
#Bioinfomatics #RNAseq
You can also send informal enquiries (info below):
www.jobs.cam.ac.uk/job/52026/
www.jobs.cam.ac.uk/job/52027/
You can also send informal enquiries (info below):
www.jobs.cam.ac.uk/job/52026/
www.jobs.cam.ac.uk/job/52027/
jobs.cam.ac.uk/job/52026/
jobs.cam.ac.uk/job/52027/
jobs.cam.ac.uk/job/52026/
jobs.cam.ac.uk/job/52027/
👉 Apply: embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
⏰ Deadline: 10 August
👉 Apply: embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
⏰ Deadline: 10 August