Arjen Jakobi
banner
cryotud.bsky.social
Arjen Jakobi
@cryotud.bsky.social
Kavli Institute of Nanoscience Delft |
Associate Professor @Delft University of Technology | https://cryoem.tudelft.nl

Interested in #cryoEM & #cryoET methods, #membranes, intracellular/innate #immunity.
Beautiful structures and mechanistic insight into endosomal lipid transfer!

Also a good example showcasing how contextualised map optimisation may be helpful in visualisation/interpretation of complex biological assemblies.
June 26, 2025 at 8:30 PM
LocScale-2.0 is deliberately designed to optimise contrast for both high-resolution detail & weak contextual densities such as membrane/micelle or flexible/low-occupancy regions

LocScale-SURFER is a ChimeraX plugin aiding w/ visualisation of contextual structure.

cryotud.github.io/locscale-sur...
May 22, 2025 at 10:10 AM
We are happy to release LocScale2.0: a tool for context-aware, confidence-weighted cryoEM map optimisation.

Taking two half maps as input, LcoScale-2.0 produces feature-enhanced maps along with a robust confidence score that guides objective map interpretation.

cryotud.github.io/locscale/
May 22, 2025 at 10:10 AM
We have an opening for a 4 yr PhD interested in membrane remodelling and cryo-EM/ET of a minimal cell division machinery: edu.nl/bukan

You will be part of the EVOLF consortium in which 30 leading biochemists/biophysicists work together to explore if and how we can build autonomous synthetic cells.
December 10, 2024 at 2:53 PM
6 hours of HADDOCKing and still going strong! ⛄️
November 23, 2024 at 7:22 PM
Really looking forward to welcoming & meeting the participants of our #EMBOStructBio course this morning!

Many of our speakers/tutors are here:
@moalquraishi.bsky.social
@sykhalid.bsky.social
@ezgikaraca.bsky.social
@amjjbonvin.bsky.social
@gchojnowski.bsky.social
@drmelissagraewert.bsky.social
November 18, 2024 at 7:07 AM