Chris Bakal
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cbakal.bsky.social
Chris Bakal
@cbakal.bsky.social
Professor of Cancer Morphodynamics
Institute of Cancer Research. CSO of Sentinal4D
In doing so, we are starting to understand the cause and consequence of what Galvani was seeing in frog legs. #Bioelectricity in cancer cells!
December 1, 2024 at 8:23 PM
In many ways our tools are essentially galvanoscopes! Albeit with far greater resolution, sensitivity, and applicability. A notable difference from a few centuries ago is my lab is developing #machinelearning and generativeAI to analyse data coming from microscopes and biosensors.

December 1, 2024 at 8:23 PM
In parallel, we have a long-standing collaboration with Pantelis Georgiou to develop CMOS biochip sensors to measure bioelectric activity across tissues – setting the stage for diagnostics
https://buff.ly/4fQkohU
December 1, 2024 at 8:23 PM
I can’t decide if in 2024 we have come a long way – or really not so far! Working with Amanda Foust and Mustafa Djamgoz at Imperial College London we have been imaging voltage using new microscopy in cancer.
https://buff.ly/4i9Rafp
December 1, 2024 at 8:23 PM
Galvani also invented the #galvanoscope as a way to measure bioelectricity in frog legs.
December 1, 2024 at 8:23 PM
#Sentinal4D and my lab at the Institute of Cancer Research have developed Al methods to analyze videos of #cancer cells, and measure how #cellshape changes over time.

We are using this technology to understand how drugs work, and find new cancer therapeutics.

link.springer.com/chapter/10.1...
Interpretable Phenotypic Profiling of 3D Cellular Morphodynamics
The dynamic 3D shape of a cell acts as a signal of its physiological state, reflecting the interplay of environmental stimuli and intra- and extra-cellular processes. However, there is little quantita...
link.springer.com
November 17, 2024 at 4:22 PM

You have to capture and analyze video footage.

The samee goes for cells. Studying fixed cells (whether an image, a transcriptome, or a proteome) will only get you so far. You won'ta really be able to understand how cancer develops, or how a drug works unless you look at cells over time.
November 17, 2024 at 4:22 PM
But adding MYCN does make the output more interpretable (and likely trustable), by pathologists. That way decisions regarding treatment are not made based only what the Al 'sees'.
November 15, 2024 at 12:19 AM
So... does adding more data always improve prediction accuracy? Not always. Integrating MYCN status doesn't necessarily enhance accuracy. In fact, image-based data alone yields comparable predictive power to multimodal data. And looking at the images is better than using MYCN status alone.
November 15, 2024 at 12:19 AM