Carlo Camilloni
@carlocamilloni.bsky.social
Associate professor at the University of Milano.
Biophysics and computational structural biology.
http://compsb.unimi.it
Developer @plumed.org
https://orcid.org/0000-0002-9923-8590
Biophysics and computational structural biology.
http://compsb.unimi.it
Developer @plumed.org
https://orcid.org/0000-0002-9923-8590
Reposted by Carlo Camilloni
The idea is to decouple the journals from the review step. They’ll still exist, but they’ll need to add other value. They’ll highlight, curate, add new perspectives. If they do a good job they can still be prestigious (like Scientific American or Wired) (1.2) 👇
November 8, 2025 at 6:02 AM
The idea is to decouple the journals from the review step. They’ll still exist, but they’ll need to add other value. They’ll highlight, curate, add new perspectives. If they do a good job they can still be prestigious (like Scientific American or Wired) (1.2) 👇
Reposted by Carlo Camilloni
A new tutorial manuscript is out! 🚀 Making @plumed.org fly: a tutorial on optimizing performance, by Daniele Rapetti, @bonomimax.bsky.social @carlocamilloni.bsky.social @bussigio.bsky.social and Gareth Tribello. arxiv.org/abs/2511.02699
Making PLUMED fly: a tutorial on optimizing performance
PLUMED is an open-source software package that is widely used for analyzing and enhancing molecular dynamics simulations that works in conjunction with most available molecular dynamics softwares. Whi...
arxiv.org
November 5, 2025 at 8:16 AM
A new tutorial manuscript is out! 🚀 Making @plumed.org fly: a tutorial on optimizing performance, by Daniele Rapetti, @bonomimax.bsky.social @carlocamilloni.bsky.social @bussigio.bsky.social and Gareth Tribello. arxiv.org/abs/2511.02699
Reposted by Carlo Camilloni
It’s official: ChatGPT can't draw a GPCR, but you’ll master them in the Filizola Lab
😜 Join Us! (send your CV and the names of at least two references to my institutional email) #Postdoc #scientist #research
😜 Join Us! (send your CV and the names of at least two references to my institutional email) #Postdoc #scientist #research
October 17, 2025 at 4:50 AM
It’s official: ChatGPT can't draw a GPCR, but you’ll master them in the Filizola Lab
😜 Join Us! (send your CV and the names of at least two references to my institutional email) #Postdoc #scientist #research
😜 Join Us! (send your CV and the names of at least two references to my institutional email) #Postdoc #scientist #research
Reposted by Carlo Camilloni
I'm hiring for a PhD position at Malmö University, Sweden!
The project will focus on molecular modelling of proteins, lipids, and biomolecular condensates at cell membranes.
More details and application form: tinyurl.com/4zm92365
Please feel free to share!
@vetenskapsradet.bsky.social | @mau.se
The project will focus on molecular modelling of proteins, lipids, and biomolecular condensates at cell membranes.
More details and application form: tinyurl.com/4zm92365
Please feel free to share!
@vetenskapsradet.bsky.social | @mau.se
October 2, 2025 at 7:46 AM
I'm hiring for a PhD position at Malmö University, Sweden!
The project will focus on molecular modelling of proteins, lipids, and biomolecular condensates at cell membranes.
More details and application form: tinyurl.com/4zm92365
Please feel free to share!
@vetenskapsradet.bsky.social | @mau.se
The project will focus on molecular modelling of proteins, lipids, and biomolecular condensates at cell membranes.
More details and application form: tinyurl.com/4zm92365
Please feel free to share!
@vetenskapsradet.bsky.social | @mau.se
We asked what a strong static EF may do to AB42 fibril, we saw a marked perturbation of the fuzzy coat and increase fluctuations of the fibril core
Electric Field-Induced Destabilization and Surface Modulation of Aβ42 Fibrils in Molecular Simulations: Theoretical Implications for DC Stimulation in Alzheimer's Disease https://www.biorxiv.org/content/10.1101/2025.09.24.678267v1
September 27, 2025 at 6:25 AM
We asked what a strong static EF may do to AB42 fibril, we saw a marked perturbation of the fuzzy coat and increase fluctuations of the fibril core
Reposted by Carlo Camilloni
Apple is entering the protein folding arena.
SimpleFold: Folding Proteins is Simpler than You Think arxiv.org/abs/2509.18480 🧬🖥️🧪 github.com/apple/ml-sim...
SimpleFold: Folding Proteins is Simpler than You Think arxiv.org/abs/2509.18480 🧬🖥️🧪 github.com/apple/ml-sim...
September 25, 2025 at 9:02 AM
Apple is entering the protein folding arena.
SimpleFold: Folding Proteins is Simpler than You Think arxiv.org/abs/2509.18480 🧬🖥️🧪 github.com/apple/ml-sim...
SimpleFold: Folding Proteins is Simpler than You Think arxiv.org/abs/2509.18480 🧬🖥️🧪 github.com/apple/ml-sim...
Reposted by Carlo Camilloni
RFdiffusion3 is here! We train a general network that explicitly models every atom and use it to design active enzymes and DNA binders.
Tremendous team effort with Jasper, Rohith, Raktim, Rafi, Yanjing, Paul, Jonathan, and many others!
Check it out: lnkd.in/eiUFfJaM.
Tremendous team effort with Jasper, Rohith, Raktim, Rafi, Yanjing, Paul, Jonathan, and many others!
Check it out: lnkd.in/eiUFfJaM.
September 19, 2025 at 3:45 PM
RFdiffusion3 is here! We train a general network that explicitly models every atom and use it to design active enzymes and DNA binders.
Tremendous team effort with Jasper, Rohith, Raktim, Rafi, Yanjing, Paul, Jonathan, and many others!
Check it out: lnkd.in/eiUFfJaM.
Tremendous team effort with Jasper, Rohith, Raktim, Rafi, Yanjing, Paul, Jonathan, and many others!
Check it out: lnkd.in/eiUFfJaM.
Reposted by Carlo Camilloni
AtomWorks is out! Building upon @biotite_python, we built a toolkit for all things biomolecules and trained RF3 with it. All open-source, test it via `pip install atomworks`!
AtomWorks: github.com/RosettaCommo...
RF3: github.com/RosettaCommo...
Paper: tinyurl.com/y2w4z65b
1/6
AtomWorks: github.com/RosettaCommo...
RF3: github.com/RosettaCommo...
Paper: tinyurl.com/y2w4z65b
1/6
August 15, 2025 at 5:44 PM
AtomWorks is out! Building upon @biotite_python, we built a toolkit for all things biomolecules and trained RF3 with it. All open-source, test it via `pip install atomworks`!
AtomWorks: github.com/RosettaCommo...
RF3: github.com/RosettaCommo...
Paper: tinyurl.com/y2w4z65b
1/6
AtomWorks: github.com/RosettaCommo...
RF3: github.com/RosettaCommo...
Paper: tinyurl.com/y2w4z65b
1/6
Reposted by Carlo Camilloni
RosettaFold 3 is here! 🧬🚀
AtomWorks (the foundational data pipeline powering it) is perhaps the really most exciting part of this release!
Congratulations @simonmathis.bsky.social and team!!! ❤️
bioRxiv preprint: www.biorxiv.org/content/10.1...
AtomWorks (the foundational data pipeline powering it) is perhaps the really most exciting part of this release!
Congratulations @simonmathis.bsky.social and team!!! ❤️
bioRxiv preprint: www.biorxiv.org/content/10.1...
August 15, 2025 at 1:26 PM
RosettaFold 3 is here! 🧬🚀
AtomWorks (the foundational data pipeline powering it) is perhaps the really most exciting part of this release!
Congratulations @simonmathis.bsky.social and team!!! ❤️
bioRxiv preprint: www.biorxiv.org/content/10.1...
AtomWorks (the foundational data pipeline powering it) is perhaps the really most exciting part of this release!
Congratulations @simonmathis.bsky.social and team!!! ❤️
bioRxiv preprint: www.biorxiv.org/content/10.1...
Reposted by Carlo Camilloni
🚀 Super excited to share our new work, led by @vschnapka.bsky.social bAIes, a Bayesian framework for generating accurate atomic-resolution ensembles of IDPs using #AlphaFold info! Now on @biorxivpreprint.bsky.social → feedback welcome! @pasteur.fr @erc.europa.eu
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
www.biorxiv.org
June 21, 2025 at 6:14 PM
🚀 Super excited to share our new work, led by @vschnapka.bsky.social bAIes, a Bayesian framework for generating accurate atomic-resolution ensembles of IDPs using #AlphaFold info! Now on @biorxivpreprint.bsky.social → feedback welcome! @pasteur.fr @erc.europa.eu
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
Reposted by Carlo Camilloni
the JIF 👇 is a very (!) narrow definition of "impact" = cites in first 2y after publication...
👉 What about "constant" or "late" impact?
👉 Why do we accept that a private company defines our impact?
👉 Why do we allow to be judged on this basis?
#researchintegrity #chemsky, #compchemsky
👉 What about "constant" or "late" impact?
👉 Why do we accept that a private company defines our impact?
👉 Why do we allow to be judged on this basis?
#researchintegrity #chemsky, #compchemsky
🎉 The wait is over! The 2025 Journal Citation Reports (JCR) is now live. #JCR2025
Learn more about the 22,249 journals included this year and celebrate the 50th anniversary of JCR with us: clarivate.com/news/clariva...
#JIF #ResearchIntegrity #TrustedJournals
Learn more about the 22,249 journals included this year and celebrate the 50th anniversary of JCR with us: clarivate.com/news/clariva...
#JIF #ResearchIntegrity #TrustedJournals
June 19, 2025 at 7:09 AM
the JIF 👇 is a very (!) narrow definition of "impact" = cites in first 2y after publication...
👉 What about "constant" or "late" impact?
👉 Why do we accept that a private company defines our impact?
👉 Why do we allow to be judged on this basis?
#researchintegrity #chemsky, #compchemsky
👉 What about "constant" or "late" impact?
👉 Why do we accept that a private company defines our impact?
👉 Why do we allow to be judged on this basis?
#researchintegrity #chemsky, #compchemsky
Reposted by Carlo Camilloni
Rapid, nanoscale dynamics of individual IDPs determine bulk properties of the entire condensate, such as viscosity.
Amazing work by Nicola Galvanetto & the Schuler lab!
www.pnas.org/doi/10.1073/...
Amazing work by Nicola Galvanetto & the Schuler lab!
www.pnas.org/doi/10.1073/...
June 4, 2025 at 9:21 PM
Rapid, nanoscale dynamics of individual IDPs determine bulk properties of the entire condensate, such as viscosity.
Amazing work by Nicola Galvanetto & the Schuler lab!
www.pnas.org/doi/10.1073/...
Amazing work by Nicola Galvanetto & the Schuler lab!
www.pnas.org/doi/10.1073/...
Reposted by Carlo Camilloni
Congratulations to Michele Parrinello for receiving the ESI Medal 2025!
@esivienna.bsky.social
@univie.ac.at
@esivienna.bsky.social
@univie.ac.at
@esivienna.bsky.social is proud to announce that the ESI Medal 2025 goes to Prof. Michele Parrinello (ETH Zürich & IIT Genova) for his groundbreaking computer simulation algorithms that advanced condensed matter physics, chemistry & biology.
Ceremony: Nov 7, 2025, Vienna
More: www.esi.ac.at/news/n65
Ceremony: Nov 7, 2025, Vienna
More: www.esi.ac.at/news/n65
May 12, 2025 at 7:55 AM
Congratulations to Michele Parrinello for receiving the ESI Medal 2025!
@esivienna.bsky.social
@univie.ac.at
@esivienna.bsky.social
@univie.ac.at
Reposted by Carlo Camilloni
Choose Science. Choose Europe.
A new Marie Skłodowska-Curie Actions Postdoctoral Fellowships 2025 call is now open.
With a budget of €404.3 million, it will support around 1,650 researchers from Europe and beyond.
Apply by 10 September → europa.eu/!fBTMgF
A new Marie Skłodowska-Curie Actions Postdoctoral Fellowships 2025 call is now open.
With a budget of €404.3 million, it will support around 1,650 researchers from Europe and beyond.
Apply by 10 September → europa.eu/!fBTMgF
May 8, 2025 at 10:12 AM
Choose Science. Choose Europe.
A new Marie Skłodowska-Curie Actions Postdoctoral Fellowships 2025 call is now open.
With a budget of €404.3 million, it will support around 1,650 researchers from Europe and beyond.
Apply by 10 September → europa.eu/!fBTMgF
A new Marie Skłodowska-Curie Actions Postdoctoral Fellowships 2025 call is now open.
With a budget of €404.3 million, it will support around 1,650 researchers from Europe and beyond.
Apply by 10 September → europa.eu/!fBTMgF
Reposted by Carlo Camilloni
What an incredibly cool paper! While knot theory strictly applies to closed curves, Tommy, @smnlssn.bsky.social , and @paulrobustelli.bsky.social show that writhe, a knot "non-invariant" that changes with smooth deformations, provides a meaningful descriptor for flexible conformations.
Presenting one of my favorite manuscripts I've ever worked on:
"Characterizing structural and kinetic ensembles of intrinsically disordered proteins using writhe"
www.biorxiv.org/content/10.1...
by Tommy Sisk, with a generative modeling component done in collaboration with @smnlssn.bsky.social
"Characterizing structural and kinetic ensembles of intrinsically disordered proteins using writhe"
www.biorxiv.org/content/10.1...
by Tommy Sisk, with a generative modeling component done in collaboration with @smnlssn.bsky.social
May 1, 2025 at 5:49 AM
What an incredibly cool paper! While knot theory strictly applies to closed curves, Tommy, @smnlssn.bsky.social , and @paulrobustelli.bsky.social show that writhe, a knot "non-invariant" that changes with smooth deformations, provides a meaningful descriptor for flexible conformations.
onlinelibrary.wiley.com/doi/10.1002/... Federico
did some modeling to make some hypothesis on the interaction of anthocyanin with glucose transporter
did some modeling to make some hypothesis on the interaction of anthocyanin with glucose transporter
Preventive Effect of Upland Pigmented Potatoes Against LPS‐Induced Inflammation in THP‐1 Macrophages
The anti-inflammatory activity of extracts from three commercial potato varieties cultivated upland was investigated on THP-1 macrophages insulted with LPS. While the chlorogenic acid (CGA)-rich extr....
onlinelibrary.wiley.com
April 25, 2025 at 1:44 PM
onlinelibrary.wiley.com/doi/10.1002/... Federico
did some modeling to make some hypothesis on the interaction of anthocyanin with glucose transporter
did some modeling to make some hypothesis on the interaction of anthocyanin with glucose transporter
Protein folding, binding and redox conditions by Stefano Gianni team in Rome the super productive Valeria Pennacchietti,
doi.org/10.1016/j.ij...
doi.org/10.1016/j.ij...
Redirecting
doi.org
April 11, 2025 at 10:52 AM
Protein folding, binding and redox conditions by Stefano Gianni team in Rome the super productive Valeria Pennacchietti,
doi.org/10.1016/j.ij...
doi.org/10.1016/j.ij...
Very proud of Amit Kumawat, Elisa Tavazzani and all coworkers for this work on hERG K+ channel rescue mechanism by ICA. Now published here: jbiomedsci.biomedcentral.com/articles/10....
April 7, 2025 at 10:27 AM
Very proud of Amit Kumawat, Elisa Tavazzani and all coworkers for this work on hERG K+ channel rescue mechanism by ICA. Now published here: jbiomedsci.biomedcentral.com/articles/10....
Reposted by Carlo Camilloni
A single python package for calculation of quality metrics like DockQ, LDDT, RMSD, & others
peppr.vant.ai
peppr.vant.ai
April 4, 2025 at 6:32 AM
A single python package for calculation of quality metrics like DockQ, LDDT, RMSD, & others
peppr.vant.ai
peppr.vant.ai
Very true!
Posting preprints has been transformative for me and how we communicate our work. Thanks bioRxiv (and arXiv and ChemRxiv etc) and all who make it possible 🙏
April 3, 2025 at 5:28 AM
Very true!
Reposted by Carlo Camilloni
Run BioEmu in Colab - just click "Runtime → Run all"! Our notebook uses ColabFold to generate MSAs, BioEmu to predict trajectories, and Foldseek to cluster conformations.
Thanks @jjimenezluna.bsky.social for the help!
🌐 colab.research.google.com/github/sokry...
📄 www.biorxiv.org/content/10.1...
Thanks @jjimenezluna.bsky.social for the help!
🌐 colab.research.google.com/github/sokry...
📄 www.biorxiv.org/content/10.1...
Google Colab
colab.research.google.com
March 29, 2025 at 9:50 AM
Run BioEmu in Colab - just click "Runtime → Run all"! Our notebook uses ColabFold to generate MSAs, BioEmu to predict trajectories, and Foldseek to cluster conformations.
Thanks @jjimenezluna.bsky.social for the help!
🌐 colab.research.google.com/github/sokry...
📄 www.biorxiv.org/content/10.1...
Thanks @jjimenezluna.bsky.social for the help!
🌐 colab.research.google.com/github/sokry...
📄 www.biorxiv.org/content/10.1...
Reposted by Carlo Camilloni
We’re looking for fellow nerds to help us make disordered proteins druggable. Love #IDPs, #MD, #NMR, #AI, #DrugDiscovery, or #MassSpec? Let’s talk.
@bindresearch.org is hiring across the board: bindresearch.org/careers/
#compchem #compbio #NMRChat #TeamMassSpec #chemjobs @chemjobber.bsky.social
@bindresearch.org is hiring across the board: bindresearch.org/careers/
#compchem #compbio #NMRChat #TeamMassSpec #chemjobs @chemjobber.bsky.social
Careers
Careers
bindresearch.org
March 24, 2025 at 10:51 AM
We’re looking for fellow nerds to help us make disordered proteins druggable. Love #IDPs, #MD, #NMR, #AI, #DrugDiscovery, or #MassSpec? Let’s talk.
@bindresearch.org is hiring across the board: bindresearch.org/careers/
#compchem #compbio #NMRChat #TeamMassSpec #chemjobs @chemjobber.bsky.social
@bindresearch.org is hiring across the board: bindresearch.org/careers/
#compchem #compbio #NMRChat #TeamMassSpec #chemjobs @chemjobber.bsky.social
Reposted by Carlo Camilloni
Structural bases for Nuclear Factor 1-X activation and DNA recognition. Prototypic insight into the NFI transcription factor family https://www.biorxiv.org/content/10.1101/2025.03.21.644642v1
March 22, 2025 at 3:45 AM
Structural bases for Nuclear Factor 1-X activation and DNA recognition. Prototypic insight into the NFI transcription factor family https://www.biorxiv.org/content/10.1101/2025.03.21.644642v1
Reposted by Carlo Camilloni
Structural bases for Nuclear Factor 1-X activation and DNA recognition. Prototypic insight into the NFI transcription factor family https://www.biorxiv.org/content/10.1101/2025.03.21.644642v1
March 22, 2025 at 3:45 AM
Structural bases for Nuclear Factor 1-X activation and DNA recognition. Prototypic insight into the NFI transcription factor family https://www.biorxiv.org/content/10.1101/2025.03.21.644642v1