Ivy Evergreen
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bytewife.bsky.social
Ivy Evergreen
@bytewife.bsky.social
Genomics, synthetic biology, machine learning, & statistics enthusiast 🖤 staff scientist @ Kundaje Lab

I won't stand idly as our rights as revoked
Reposted by Ivy Evergreen
@saramostafavi.bsky.social (@Genentech) & I (@Stanford) r excited to announce co-advised postdoc positions for candidates with deep expertise in ML for bio (especially sequence to function models, causal perturbational models & single cell models). See details below. Pls RT 1/
June 19, 2025 at 8:55 PM
Reposted by Ivy Evergreen
Today was a big day for the lab. We had two back to back thesis defenses and the defenders defended with great science and character.

Congrats to DR. Kelly Cochran & DR. @soumyakundu.bsky.social on this momentous achievement.

Brilliant scientists with brilliant futures ahead. 🎉🎉🎉
May 15, 2025 at 5:19 AM
Reposted by Ivy Evergreen
The entire archive of all CDC datasets uploaded before January 28th, 2025 has been backed up on Internet Archive.

Incredible work everyone. Science will never be silenced!
February 3, 2025 at 4:37 AM
Reposted by Ivy Evergreen
BREAKING NEWS: CDC orders mass retraction and revision of submitted research across all science and medicine journals. Banned terms must be scrubbed.

Goes beyond MMWR +other CDC pubs. Applies to research already submitted to top medical journals.

Take a look.
open.substack.com/pub/insideme...
BREAKING NEWS: CDC orders mass retraction and revision of submitted research across all science and medicine journals. Banned terms must be scrubbed.
Any unpublished manuscript mentioning certain topics, including gender and "LGBT," must be pulled or revised.
open.substack.com
February 1, 2025 at 9:20 PM
Reposted by Ivy Evergreen
A consensus variant-to-function score to functionally prioritize variants for disease
www.biorxiv.org/content/10.1...

Great work by Kushal Dey's lab on an ensemble approach that integrates diverse V2F scores to prioritize causal variants in GWAS loci. #ENCODE4
A consensus variant-to-function score to functionally prioritize variants for disease
Identifying and functionally characterizing causal disease variants in genome-wide association studies remains a pressing challenge. Here, we construct a consensus variant-to-function (cV2F) score tha...
www.biorxiv.org
November 11, 2024 at 6:35 PM