Benedikt Wimmer
@bwmr.net
PostDoc at the Jacobs-Wegner lab in Stanford. Previously at the Medalia Lab (Zurich) and Chlanda lab (Heidelberg). Using cryo-ET and light microscopy to study bacteria and how they help and hurt us. #teamtomo
(4/5)
By combining in-situ #cryoet and #proteomics, we could assemble an integrative model, which illustrates the remarkable architecture of the amylosome - the complex that allows R. bromii to act as keystone degrader in the gut microbiome.
By combining in-situ #cryoet and #proteomics, we could assemble an integrative model, which illustrates the remarkable architecture of the amylosome - the complex that allows R. bromii to act as keystone degrader in the gut microbiome.
April 3, 2025 at 12:41 PM
(4/5)
By combining in-situ #cryoet and #proteomics, we could assemble an integrative model, which illustrates the remarkable architecture of the amylosome - the complex that allows R. bromii to act as keystone degrader in the gut microbiome.
By combining in-situ #cryoet and #proteomics, we could assemble an integrative model, which illustrates the remarkable architecture of the amylosome - the complex that allows R. bromii to act as keystone degrader in the gut microbiome.
... which can then be written out as binary masks in the mrc format and visualized or used however you like:
February 6, 2025 at 11:02 AM
... which can then be written out as binary masks in the mrc format and visualized or used however you like:
... and allows you to easily create labels containing only the IDs of interest.
February 6, 2025 at 11:02 AM
... and allows you to easily create labels containing only the IDs of interest.
"napari-segselect" automatically opens the "*_segmented.mrc" files from membrain-seg as a label field...
February 6, 2025 at 11:02 AM
"napari-segselect" automatically opens the "*_segmented.mrc" files from membrain-seg as a label field...
Hey #teamtomo, if you often find yourself using the excellent membrain-seg from @lorenzlamm.bsky.social et al., you might find my napari plugin "napari-segselect" useful. Let's say your tomogram contains the edges of two bacterial cells, each with a membrane and cell wall:
February 6, 2025 at 11:02 AM
Hey #teamtomo, if you often find yourself using the excellent membrain-seg from @lorenzlamm.bsky.social et al., you might find my napari plugin "napari-segselect" useful. Let's say your tomogram contains the edges of two bacterial cells, each with a membrane and cell wall: