Introducing warpfield, an open source Python library for GPU-accelerated non-rigid 3D registration. Warps and aligns gigavoxel volumes within seconds (not hours). For 3D microscopy, region-to-region and cell-to-cell matching.
A collaboration with @mh123.bsky.social 🚀
github.com/danionella/w...

High-speed 3D random access two-photon imaging at ≥ 300 kHz – with SPARCLS: opg.optica.org/optica/fullt...

By the outstanding @carolineberlage.bsky.social and team, including @urslucasboehm.bsky.social, @andrewplested.bsky.social et al.

Next stop: brain. We are interested in brain-wide circuits underlying acoustic communication (from hearing to sound production), which we currently study with the volumetric whole-brain microscope developed by @mh123.bsky.social and Jörg Henninger. www.nature.com/articles/s41...

Danionella clicks can reach 140 dB! How can a tiny fish under 12 mm produce such unusually loud sounds? Verity Cook found a unique sound production apparatus that shoots a specialized cartilage against the swim bladder, accelerating at over 20000 m/s^2: www.pnas.org/doi/10.1073/...
Video with sound

We’re seeking a postdoc/student excited about animal communication, brain-wide circuits, microscopy, singing fish (Danionella), wacky ideas and who likes to: get things done, experiment, analyze, ask, learn, help and cooperate. jlab.berlin