There is a new Master of Physics of Life in the house. Congratulations, Adnan! Well done! It was really a superb Defense!
@poldresden.bsky.social

I have already been part of your movement without knowing :-)

We have a postdoc position for a project that is very analogous. The deadline has passed, but feel free to still apply, if you are interested. 🧵 6/6

In this paper we used data from patient derived organoids from adenomas of the gastroesophageal junction treated with neoadjuvant FLOT chemotherapy in the patient, or of the organoids from the untreated tumour. We reconstructed the clonal dynamics and integrated the single cell transcriptomes.🧵 2/6

We find that both the 🧬 sequence and the epigenome contribute essential information and the models perform best, when trained on both. But who contributes what? To answer this, interpretable machine learning helps and it is in the paper 😉 🧵 4/4

In this paper we disentangle what determines the genomic location of 🧬-double strand breaks looking at the 🧬 sequence and the epigenome 🧵 2/4

@helenajambor.bsky.social
Making a point about the importance of data visualization.
#theconferencetoendallconferences
#TCTEaC

I am excited to see the first Johannstadt Campus Symposium on Computational Biology start. Looking forward to 4 exciting talks and a 🍻 hour. If you are around, please drop by.

Taking a break from 🧬 👩🏼‍💻 and went home. I’m still at the center of things, or at least, of the European Union 🇪🇺.