Ankur Parikh
@ankur-parikh.bsky.social
Staff Research Scientist at Google DeepMind. ML for Biology and Chemistry (Previously NLP). Former adjunct assistant prof at NYU.
All opinions my own.
https://scholar.google.com/citations?user=bRpjhycAAAAJ&hl=en&oi=ao
All opinions my own.
https://scholar.google.com/citations?user=bRpjhycAAAAJ&hl=en&oi=ao
Reposted by Ankur Parikh
Here’s the updated Computational Biology Starter Pack! Let me know if you'd like to be included.
go.bsky.app/QVPoZXp
go.bsky.app/QVPoZXp
November 24, 2024 at 4:33 PM
Here’s the updated Computational Biology Starter Pack! Let me know if you'd like to be included.
go.bsky.app/QVPoZXp
go.bsky.app/QVPoZXp
Reposted by Ankur Parikh
New starter pack! go.bsky.app/GZ4hZzu
October 28, 2024 at 9:43 AM
New starter pack! go.bsky.app/GZ4hZzu
Reposted by Ankur Parikh
We translated a validation strategy in Materials to Small molecules.
A key problem in cross-validation is splitting of data. Here we propose a step-forward CV. People are used to scaffold splits, time splits etc. but these all have limitations.
A key problem in cross-validation is splitting of data. Here we propose a step-forward CV. People are used to scaffold splits, time splits etc. but these all have limitations.
Out-of-Distribution Validation for Bioactivity Prediction in Drug...
Recent advances in machine learning for materials science have significantly improved the prediction of novel materials. Building on these methods, we have adapted them for drug discovery...
openreview.net
November 21, 2024 at 2:04 AM
We translated a validation strategy in Materials to Small molecules.
A key problem in cross-validation is splitting of data. Here we propose a step-forward CV. People are used to scaffold splits, time splits etc. but these all have limitations.
A key problem in cross-validation is splitting of data. Here we propose a step-forward CV. People are used to scaffold splits, time splits etc. but these all have limitations.
Reposted by Ankur Parikh
Thrilled to share our approach for language model-guided discovery of unknown mammalian metabolites: DeepMet. We’ve now used this approach to discover ~50 new human and mouse metabolites! www.biorxiv.org/content/10.1...
Language model-guided anticipation and discovery of unknown metabolites
Despite decades of study, large parts of the mammalian metabolome remain unexplored. Mass spectrometry-based metabolomics routinely detects thousands of small molecule-associated peaks within human ti...
www.biorxiv.org
November 19, 2024 at 3:40 PM
Thrilled to share our approach for language model-guided discovery of unknown mammalian metabolites: DeepMet. We’ve now used this approach to discover ~50 new human and mouse metabolites! www.biorxiv.org/content/10.1...
Reposted by Ankur Parikh
Two BioML starter packs now:
Pack 1: go.bsky.app/2VWBcCd
Pack 2: go.bsky.app/Bw84Hmc
DM if you want to be included (or nominate people who should be!)
Pack 1: go.bsky.app/2VWBcCd
Pack 2: go.bsky.app/Bw84Hmc
DM if you want to be included (or nominate people who should be!)
Anybody have a bioml starter pack?
November 18, 2024 at 5:09 PM
Two BioML starter packs now:
Pack 1: go.bsky.app/2VWBcCd
Pack 2: go.bsky.app/Bw84Hmc
DM if you want to be included (or nominate people who should be!)
Pack 1: go.bsky.app/2VWBcCd
Pack 2: go.bsky.app/Bw84Hmc
DM if you want to be included (or nominate people who should be!)
Reposted by Ankur Parikh
November 15, 2024 at 12:29 AM
Reposted by Ankur Parikh
I'm making a list of AI for Science researchers on bluesky — let me know if I missed you / if you'd like to join!
go.bsky.app/AcP9Lix
go.bsky.app/AcP9Lix
November 10, 2024 at 12:11 AM
I'm making a list of AI for Science researchers on bluesky — let me know if I missed you / if you'd like to join!
go.bsky.app/AcP9Lix
go.bsky.app/AcP9Lix
Reposted by Ankur Parikh
This pack is now up to 67 people, broadly in AI and advanced data for science. Follow along, and forward me others who should be there! 🦋🦋
go.bsky.app/JeFdryY
go.bsky.app/JeFdryY
November 16, 2024 at 4:32 PM
This pack is now up to 67 people, broadly in AI and advanced data for science. Follow along, and forward me others who should be there! 🦋🦋
go.bsky.app/JeFdryY
go.bsky.app/JeFdryY
Reposted by Ankur Parikh
We got an 🥂 Outstanding Paper Award!! Cannot be more grateful 🥹 This is super validating for our long pursuit of computational work on QUD.
Congrats to the amazing @yatingwu.bsky.social, Ritika Mangla, Alex Dimakis, @gregdnlp.bsky.social
Congrats to the amazing @yatingwu.bsky.social, Ritika Mangla, Alex Dimakis, @gregdnlp.bsky.social
Wednesday at #EMNLP: @yatingwu.bsky.social will present our work connecting curiosity and questions in discourse. We built strong models to predict salience, outperforming large LLMs.
👉[Oral] Discourse+Phonology+Syntax2 10:30-12:00 @ Flagler
also w/ Ritika Mangla @gregdnlp.bsky.social Alex Dimakis
👉[Oral] Discourse+Phonology+Syntax2 10:30-12:00 @ Flagler
also w/ Ritika Mangla @gregdnlp.bsky.social Alex Dimakis
November 15, 2024 at 1:12 PM
We got an 🥂 Outstanding Paper Award!! Cannot be more grateful 🥹 This is super validating for our long pursuit of computational work on QUD.
Congrats to the amazing @yatingwu.bsky.social, Ritika Mangla, Alex Dimakis, @gregdnlp.bsky.social
Congrats to the amazing @yatingwu.bsky.social, Ritika Mangla, Alex Dimakis, @gregdnlp.bsky.social
Reposted by Ankur Parikh
Evo: A genomic language model of prokaryote genomes generates functional cas9 proteins and transposons.
@brianhiestand.bsky.social
www.science.org/doi/10.1126/...
@brianhiestand.bsky.social
www.science.org/doi/10.1126/...
November 14, 2024 at 8:53 PM
Evo: A genomic language model of prokaryote genomes generates functional cas9 proteins and transposons.
@brianhiestand.bsky.social
www.science.org/doi/10.1126/...
@brianhiestand.bsky.social
www.science.org/doi/10.1126/...