Andrew G. York
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andrewgyork.bsky.social
Andrew G. York
@andrewgyork.bsky.social
I'm a physicist; I invent techniques to measure and control biological systems.

Homepage: andrewgyork.github.io
I love the 10%/90% science-to-venting ratio in this tweet.
November 12, 2025 at 7:38 PM
Ahhhh that makes sense, the halfway point sucks.

In my experience, the hardest part of teaching a biologist to code is uninstalling the three extra versions of python they have on their Mac (brew, conda, etc), and relearning basic crap that Mac obfuscates like "file paths".
October 16, 2025 at 2:56 AM
I've never failed, when I try this. I've done it on Windows and Linux. I don't do anything fancy, I follow the default instructions. What goes wrong for you?
October 16, 2025 at 2:46 AM
This press release is bizarre. We've had the iSIM and the SoRa as commercial products for almost a decade now.

How can you ignore a technique that's widely distributed and strictly superior? Do you just not know about it?
October 13, 2025 at 11:38 AM
September 23, 2025 at 1:31 PM
That's why we use the alignment crane: thousands of dollars worth of 3d precision that detaches post-alignment, leaving only a solid steel post/clamp that's nearly incapable of drift.
September 23, 2025 at 11:44 AM
I think my speakers aren't working, I can't hear the Benny Hill music?
August 21, 2025 at 2:27 AM
Oh I think I get it - 10 fps acquisition, 250 fps playback?
August 5, 2025 at 2:01 AM
What a great answer! That's way more photons than I would have guessed.

More photons than Alexa 647! Amazing.
August 5, 2025 at 2:01 AM
(also, looks like 10 fps, not 250, right?)
August 3, 2025 at 12:55 AM
There's about 10^5 photons in a single GFP [1]; how many do we estimate are in a single smURFP?

(I'm interested if smURFP is really more photostable than GFP, vs the smURFP cell here is just more densely tagged and imaged at a lower excitation rate)

[1] doi.org/10.1016/j.bb...
Redirecting
doi.org
August 2, 2025 at 9:46 PM
It will also have enormous advantages over light field, because it will be several orders of magnitude faster, and much higher resolution.

Light field is an inherently slow, low resolution technique, unfortunately. It's strange no one seems to notice this.
June 16, 2025 at 7:09 PM
I know exactly how to do that inference. Hit me up for a zoom call.

(It's the same math as every other inverse problem in microscopy, btw).
June 16, 2025 at 7:07 PM
Hey awesome!

How many pixels are in it?

(I know we both know this, but I'm hoping folks will stop using the correct but shibboleth-y terms "etendue"/"space-bandwidth product" and switch to using the more accessible term "how many pixels are in that lens")
May 19, 2025 at 8:08 PM
Illumination gives singlets and triplets in ~100-1 ratio. Bleaching is mostly from the long-lived (~ms) reactive triplet. Triplets also absorb light, which can be protective or destructive depending on the color and FP. Higher intensity gives more triplet absorption.

www.nature.com/articles/s41...
Near-infrared co-illumination of fluorescent proteins reduces photobleaching and phototoxicity - Nature Biotechnology
A dual illumination method reduces photobleaching for green and yellow fluorescent proteins.
www.nature.com
February 25, 2025 at 4:43 PM
The hosts are friends of mine, it'll be at their place. It's a very tech-focused house with a lot of very driven people living (and working?) there.

Click the link and register to get the address.
January 26, 2025 at 10:06 PM