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alignbio.bsky.social
The Align Foundation
@alignbio.bsky.social
Improving life science with programmable experiments. 🧬 🤖 Home of the Protein Engineering Tournament & Open Datasets Initiative.
5/5
We understand this may cause inconvenience, and we appreciate your patience and continued support as we work to deliver a high-quality, impactful Tournament. For any questions or concerns, please contact us at tournament@alignbio.org
October 15, 2025 at 4:47 PM
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The new timeline is as follows:

-Registration deadline: Nov. 14th 2025

Predictive phase:
-Zero-shot track: Dec. 1st 2025 to Jan. 16th 2026
-Supervised track: Jan. 26th to Feb. 20th 2026

Generative phase:
-Round-1: Mar. 9th to Apr. 3rd 2026
-Round-2: Jul. 20th to Aug. 14th 2026
October 15, 2025 at 4:47 PM
3/5
The Tournament will establish the first-of-its-kind benchmark for predictive and generative AI/ML models in engineering PETases. We remain committed to enabling real-world, transparent, and accessible benchmarking competitions, and this adjustment is to uphold that commitment.
October 15, 2025 at 4:47 PM
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This additional time will allow us to:
•Complete the generation of a high-quality training dataset 🧬🧪
•Secure the best sponsorships to expand access to the Tournament 🖥️💪
•Register more participants 👥🚀
October 15, 2025 at 4:47 PM
Register before Oct. 17 👉 alignbio.org/get-involved...
More about EvolutionaryScale’s API (Forge) 👉 forge.evolutionaryscale.ai
August 21, 2025 at 4:13 PM
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What’s coming:
→ More protein functions
→ Sharper ML strategies
→ Public data access portal
→ And yes—we’re hiring.
🔗 alignbio.org/careers
#openbiology #machinelearning #proteinfunction #bioengineering
Careers — Align to Innovate
alignbio.org
July 21, 2025 at 2:59 PM
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GROQ-seq is designed for reproducibility.
Standardized assays + distributed data collection = a foundation for robust, ML-ready protein function data.

Next: scale up function types, refine ML pipelines, expand access.
July 21, 2025 at 2:59 PM
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🧪 Year One in brief:
Started onboarding 6 protein function types
Launched multi-site runs at NIST + DAMP Lab
Achieved 100K–500K variant throughput per run
Standardized, modular, reproducible, open-source
📘 Full report: doi.org/10.5281/zeno...
Year One Report: Growth-based Quantitative Sequencing (GROQ-Seq) Platform
This report summarizes the first year of development and deployment of the Growth-based Quantitative Sequencing (GROQ-seq) platform, a pooled functional assay pipeline for large-scale, reproducible me...
doi.org
July 21, 2025 at 2:59 PM
🔗 Sign up by Oct 17 → bit.ly/Tournament25
🔗 Want to read more? Last year’s amalyase engineering competition was recently published in PROTEINS: onlinelibrary.wiley.com/doi/10.1002/...
#AIforBiology #ProteinDesign #ClimateTech
2025 Tournament — Align to Innovate
bit.ly
July 8, 2025 at 4:27 PM
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🏆 Why join?:
• $30K in cash prizes
• Free DNA synthesis + wet lab testing
• Leaderboard visibility
• Publication in a special issue of Proteins
• Sponsored conference presentations
2025 Tournament — Align to Innovate
bit.ly
July 8, 2025 at 4:27 PM
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The tournament has two phases:

🔹 *Predictive* (Nov 3 – Dec 23):
Predict PETase sequence properties
🔹 *Generative* (Jan 5 – Apr 10): Design novel sequences to maximize enzyme activity.

Every submission is synthesized and tested.
July 8, 2025 at 4:27 PM
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This is a *lab-validated* benchmark competition for real protein function.

The winner will be determined by experiment. We’ll test:

🔥 Enzymatic activity at high temperatures
🧬 Protein expression
Results go straight to the leaderboard.

🔗 Register by Oct. 17: bit.ly/Tournament25
2025 Tournament — Align to Innovate
bit.ly
July 8, 2025 at 4:27 PM
Read the news release here: alignbio.org/pressrelease...
June 18, 2025 at 2:00 PM
🧬 Growth + morphology data across diverse conditions
🔗 Linked to genome references with robust metadata
📊 Built for ML training, benchmarking, reproducibility

🙌 Thx to Jensen Lab for their foundational work that helped enable this platform. Lean more here: alignbio.org/datasets-mic...
June 18, 2025 at 2:00 PM
7/7 🧵Once operational, the method will be openly available through Align’s Data Portal. The community will be able to request new enzyme measurements – and explore our findings. Stay tuned!
April 28, 2025 at 5:23 PM