Days spent collecting markers, clones, and fluorochromes from OMIPs. Human CD4 alone has 9 monoclonals raised against it.

The tables need more cleaning and processing. That said, this is a happy place where I can start cooking API endpoints.

It is quite cute that gpt-oss-120b (through OpenRouter) tried to become really really helpful.

It even advised me the flow panel to use.

Qwen3-Coder helped me write a browser extension that allows LLM to access the paper currently displayed on the screen, so I can ask question directly without scrolling up and down repeatedly like a madman.

I did 15+ Boltz-2 runs during a single session before. Monitoring was tedious (nvidia-smi or nvitop), that then led me to baking a Prometheus exporter that scraped nvidia-smi. Still tedious because I needed to set up Grafana and Prometheus.

With o4 Mini's help, I wrote Goof.

Zig is fun. I statically linked CGO for my Golang project (that SQLite3 driver) and it just works.

just compile-static-linux

Going through some notes on flow cytometry fluorescence spillover and compensation, decided to make an interactive note for it in JavaScript.

Matrix multiplication and matrix inversion in JavaScript, hand-rolled. What could go wrong?

Came back to Blender because BioRender/Inkscape frustrated me.

Here's a small attempt at visualizing ELISA. This is a very early stage.

It is very impressive that Anthropic Claude (3.5 Sonnet) knows that spillover characteristics for PE, PE-Cy5, and R718 into their corresponding detectors.

(weekend grokking into the algorithms as I was nerd-sniped earlier during the day)

Friends, I have jumped to the other side.

11 years ago today

An experiment in progress to change the way I am consuming news beginning next year: bots, and tons of them.

Tried loading 100,000 flu A H1 HA sequences into ChimeraX, it crashed.

Tried again with 1,000 sequences, then it worked...

But anyway, I got this pretty figure.

Since I wrote that small Python package for automating ridgeline plot, I have been abusing it even for small stuff.

Bluesky now has over 10 million users, and I was #930,367!

Small bit of weekend was well spent: making the footnotes more appealing to click on. This is much better than scrolling all the way down

I tried workflow management systems, ended up going back to bash scripts anyway. So much more flexible, so much easier to configure.

Then I decided to try writing a pipeline in Go. We shall see. So far so good.