Tri Kaloudis
@trikaloudis.bsky.social
Water quality/organic pollutants/aquatic metabolomics. Save water, drink beer. My own views here. He/him. www.aquomixlab.com @CYANOCOST @WaterTopCost. #teammassspec
Reposted by Tri Kaloudis
Available to read now via Open Access:
pubs.rsc.org/en/content/a...
Fast, general-purpose metabolome analysis by mixed-mode liquid chromatography–mass spectrometry
Nicola Zamboni et al @nzamboni.bsky.social @alaaothman.bsky.social @ethz.ch
#MassSpec
pubs.rsc.org/en/content/a...
Fast, general-purpose metabolome analysis by mixed-mode liquid chromatography–mass spectrometry
Nicola Zamboni et al @nzamboni.bsky.social @alaaothman.bsky.social @ethz.ch
#MassSpec
October 30, 2025 at 9:28 AM
Available to read now via Open Access:
pubs.rsc.org/en/content/a...
Fast, general-purpose metabolome analysis by mixed-mode liquid chromatography–mass spectrometry
Nicola Zamboni et al @nzamboni.bsky.social @alaaothman.bsky.social @ethz.ch
#MassSpec
pubs.rsc.org/en/content/a...
Fast, general-purpose metabolome analysis by mixed-mode liquid chromatography–mass spectrometry
Nicola Zamboni et al @nzamboni.bsky.social @alaaothman.bsky.social @ethz.ch
#MassSpec
Reposted by Tri Kaloudis
We are super excited that our new paper on microfluidic-based LC-MS/MS fractionation in combination with bioluminescence bioreporters readouts, for compound-resolved bioactivity metabolomics, was just published: pubs.acs.org/doi/10.1021/...
October 26, 2025 at 9:24 PM
We are super excited that our new paper on microfluidic-based LC-MS/MS fractionation in combination with bioluminescence bioreporters readouts, for compound-resolved bioactivity metabolomics, was just published: pubs.acs.org/doi/10.1021/...
Reposted by Tri Kaloudis
📢 #Abstract submission for #SETACMaastricht is open! Join us in May and share your latest #research with a vibrant community of #environmental scientists and professionals. 🌿🧪 Submit your abstract by 26 November and take part in shaping a bold scientific programme!
🔗 lnkd.in/e9rXdwdQhttp...
🔗 lnkd.in/e9rXdwdQhttp...
Call for Abstracts: Share Your Science at SETAC Maastricht
www.setac.org
October 17, 2025 at 7:01 AM
📢 #Abstract submission for #SETACMaastricht is open! Join us in May and share your latest #research with a vibrant community of #environmental scientists and professionals. 🌿🧪 Submit your abstract by 26 November and take part in shaping a bold scientific programme!
🔗 lnkd.in/e9rXdwdQhttp...
🔗 lnkd.in/e9rXdwdQhttp...
Reposted by Tri Kaloudis
BIG ANNOUNCEMENT📣: I haven’t been this excited to be part of something new in 15 years… Thrilled to reveal the passion project I’ve been working on for the past year and a half!🙀🥳 (thread 👇)
October 15, 2025 at 12:22 PM
BIG ANNOUNCEMENT📣: I haven’t been this excited to be part of something new in 15 years… Thrilled to reveal the passion project I’ve been working on for the past year and a half!🙀🥳 (thread 👇)
Reposted by Tri Kaloudis
Web-based multi-omics suite by Jianguo Xia lab
ExpressAnalyst➡️Transcriptomics/Proteomics
MetaboAnalyst➡️Metabolomics
OmicsNet, OmicsAnalyst➡️Mutiomics integration
omicsnet.ca
www.omicsanalyst.ca
+miRNet mGWAS-Explorer MicrobiomeAnalyst
#NatureProtocols 2024
www.nature.com/articles/s41...
ExpressAnalyst➡️Transcriptomics/Proteomics
MetaboAnalyst➡️Metabolomics
OmicsNet, OmicsAnalyst➡️Mutiomics integration
omicsnet.ca
www.omicsanalyst.ca
+miRNet mGWAS-Explorer MicrobiomeAnalyst
#NatureProtocols 2024
www.nature.com/articles/s41...
October 17, 2025 at 12:13 PM
Web-based multi-omics suite by Jianguo Xia lab
ExpressAnalyst➡️Transcriptomics/Proteomics
MetaboAnalyst➡️Metabolomics
OmicsNet, OmicsAnalyst➡️Mutiomics integration
omicsnet.ca
www.omicsanalyst.ca
+miRNet mGWAS-Explorer MicrobiomeAnalyst
#NatureProtocols 2024
www.nature.com/articles/s41...
ExpressAnalyst➡️Transcriptomics/Proteomics
MetaboAnalyst➡️Metabolomics
OmicsNet, OmicsAnalyst➡️Mutiomics integration
omicsnet.ca
www.omicsanalyst.ca
+miRNet mGWAS-Explorer MicrobiomeAnalyst
#NatureProtocols 2024
www.nature.com/articles/s41...
Abstract submission is now open (till 26 November). Join us in an exciting #HABs Session #SETACMaastricht 👇
Session description: setac.secure-platform.com/meetings/gal...
#SETAC #SETACEurope #SETAC2026
@setac.bsky.social @setac-glb.bsky.social
Session description: setac.secure-platform.com/meetings/gal...
#SETAC #SETACEurope #SETAC2026
@setac.bsky.social @setac-glb.bsky.social
🧪📣 Save the date for SETAC Europe 2016 @setac.bsky.social #SETACMaastricht !
Our Session title: "Integrating #Genomics, #Metabolomics, and Control Strategies to Address Harmful Algal and #Cyanobacterial Blooms", Chaired by Petra Visser, Dail Laughinghouse, @anastasiahiskia.bsky.social.
Our Session title: "Integrating #Genomics, #Metabolomics, and Control Strategies to Address Harmful Algal and #Cyanobacterial Blooms", Chaired by Petra Visser, Dail Laughinghouse, @anastasiahiskia.bsky.social.
October 14, 2025 at 4:45 PM
Abstract submission is now open (till 26 November). Join us in an exciting #HABs Session #SETACMaastricht 👇
Session description: setac.secure-platform.com/meetings/gal...
#SETAC #SETACEurope #SETAC2026
@setac.bsky.social @setac-glb.bsky.social
Session description: setac.secure-platform.com/meetings/gal...
#SETAC #SETACEurope #SETAC2026
@setac.bsky.social @setac-glb.bsky.social
Reposted by Tri Kaloudis
Thrilled to share with you a recent work from our group: Computational Mass Spectrometry-Based Reassessment of European Amanita sect. Phalloideae Cyclopeptidome | Journal of Natural Products pubs.acs.org/doi/10.1021/... Please have a look to the associated MassQL compendium.
Computational Mass Spectrometry-Based Reassessment of European Amanita sect. Phalloideae Cyclopeptidome
An advanced metabolomic workflow featuring expert knowledge-tailored mass spectral queries and multi-informative molecular networking was applied to French DNA-barcoded collections of Amanita species ...
pubs.acs.org
October 13, 2025 at 6:00 AM
Thrilled to share with you a recent work from our group: Computational Mass Spectrometry-Based Reassessment of European Amanita sect. Phalloideae Cyclopeptidome | Journal of Natural Products pubs.acs.org/doi/10.1021/... Please have a look to the associated MassQL compendium.
Reposted by Tri Kaloudis
A week with Judita Koreiviene, Jurate Karosiene and their Algology (Phycology) lab at the Natural Research Center in #Vilnius. We had fun setting up the HPLC method for #microcystins and organizing an HPLC seminar. A new collaboration has started and exciting results are coming soon....
October 11, 2025 at 5:56 AM
A week with Judita Koreiviene, Jurate Karosiene and their Algology (Phycology) lab at the Natural Research Center in #Vilnius. We had fun setting up the HPLC method for #microcystins and organizing an HPLC seminar. A new collaboration has started and exciting results are coming soon....
Reposted by Tri Kaloudis
Last week we had the pleasure to host Constantina Varnava, PhD candidate of Iro Tsipa's group at the University of #Cyprus. We had fun analyzing MS datasets for #microbial #metabolites.
October 7, 2025 at 9:13 AM
Last week we had the pleasure to host Constantina Varnava, PhD candidate of Iro Tsipa's group at the University of #Cyprus. We had fun analyzing MS datasets for #microbial #metabolites.
The #IFHAB Workshop 16-17 October at Hamilton #Ontario. #Freshwater #HABs. Still time to register. www.ifhabworkshop.com
October 4, 2025 at 5:09 AM
The #IFHAB Workshop 16-17 October at Hamilton #Ontario. #Freshwater #HABs. Still time to register. www.ifhabworkshop.com
Reposted by Tri Kaloudis
Impact of Salinity on Cell Surface Chemistry of Cyanobacteria From Freshwater, Marine and Alkaline Environments: A Hidden Phosphorus Engine enviromicro-journals.onlinelibrary.wiley.com/doi/10.1111/...
Impact of Salinity on Cell Surface Chemistry of Cyanobacteria From Freshwater, Marine and Alkaline Environments: A Hidden Phosphorus Engine
The study examines the impact of salinity on surface properties of freshwater Synechocystis sp. PCC6803, marine Synechococcus sp. PCC8806 and alkaliphilic Spirulina platensis. The differences in memb...
enviromicro-journals.onlinelibrary.wiley.com
October 1, 2025 at 4:02 PM
Impact of Salinity on Cell Surface Chemistry of Cyanobacteria From Freshwater, Marine and Alkaline Environments: A Hidden Phosphorus Engine enviromicro-journals.onlinelibrary.wiley.com/doi/10.1111/...
Reposted by Tri Kaloudis
Aaand it's out! Meet MITE - the natural product tailoring enzyme database, just published in @narjournal.bsky.social! MITE DB captures the substrate- and reaction-specificity of tailoring enzymes, allowing to capture this information in a human- and machine-readable way! doi.org/10.1093/nar/...
September 27, 2025 at 9:11 AM
Aaand it's out! Meet MITE - the natural product tailoring enzyme database, just published in @narjournal.bsky.social! MITE DB captures the substrate- and reaction-specificity of tailoring enzymes, allowing to capture this information in a human- and machine-readable way! doi.org/10.1093/nar/...
🧪📣 Save the date for SETAC Europe 2016 @setac.bsky.social #SETACMaastricht !
Our Session title: "Integrating #Genomics, #Metabolomics, and Control Strategies to Address Harmful Algal and #Cyanobacterial Blooms", Chaired by Petra Visser, Dail Laughinghouse, @anastasiahiskia.bsky.social.
Our Session title: "Integrating #Genomics, #Metabolomics, and Control Strategies to Address Harmful Algal and #Cyanobacterial Blooms", Chaired by Petra Visser, Dail Laughinghouse, @anastasiahiskia.bsky.social.
September 26, 2025 at 6:44 AM
🧪📣 Save the date for SETAC Europe 2016 @setac.bsky.social #SETACMaastricht !
Our Session title: "Integrating #Genomics, #Metabolomics, and Control Strategies to Address Harmful Algal and #Cyanobacterial Blooms", Chaired by Petra Visser, Dail Laughinghouse, @anastasiahiskia.bsky.social.
Our Session title: "Integrating #Genomics, #Metabolomics, and Control Strategies to Address Harmful Algal and #Cyanobacterial Blooms", Chaired by Petra Visser, Dail Laughinghouse, @anastasiahiskia.bsky.social.
Reposted by Tri Kaloudis
Next at VAAM Workshop at @freieuniversitaet.bsky.social , Alexandra Eckart from HIPS talking about her discoveries of tenacious bacteria isolated from Hydractinia echinata hydroids.
September 25, 2025 at 7:33 AM
Next at VAAM Workshop at @freieuniversitaet.bsky.social , Alexandra Eckart from HIPS talking about her discoveries of tenacious bacteria isolated from Hydractinia echinata hydroids.
Reposted by Tri Kaloudis
MassVision: An Open-Source End-to-End Platform for AI-Driven Mass Spectrometry Imaging Analysis pubs.acs.org/doi/10....
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#proteomics #prot-paper
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#proteomics #prot-paper
September 19, 2025 at 7:20 AM
MassVision: An Open-Source End-to-End Platform for AI-Driven Mass Spectrometry Imaging Analysis pubs.acs.org/doi/10....
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#proteomics #prot-paper
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#proteomics #prot-paper
Reposted by Tri Kaloudis
In a large community effort with 50 coauthors, we analyzed the same set of marine dissolved organic matter samples across 24 laboratories via non-targeted LC-MS/MS, to check if we get comparable data.
If you want to check it out, you can find our preprint here:
doi.org/10.26434/che...
If you want to check it out, you can find our preprint here:
doi.org/10.26434/che...
September 17, 2025 at 3:20 PM
In a large community effort with 50 coauthors, we analyzed the same set of marine dissolved organic matter samples across 24 laboratories via non-targeted LC-MS/MS, to check if we get comparable data.
If you want to check it out, you can find our preprint here:
doi.org/10.26434/che...
If you want to check it out, you can find our preprint here:
doi.org/10.26434/che...
Reposted by Tri Kaloudis
Early warning of harmful cyanobacteria blooms based on high frequency in situmonitoring and intelligible machine learning modelling: The case study of Lake Müggelsee (Germany) www.sciencedirect.com/science/arti...
Early warning of harmful cyanobacteria blooms based on high frequency in situ monitoring and intelligible machine learning modelling: The case study of Lake Müggelsee (Germany)
Driven by eutrophication and global warming, the occurrence and frequency of harmful cyanobacteria blooms (CyanoHABs) are increasing worldwide, posing…
www.sciencedirect.com
September 10, 2025 at 9:30 AM
Early warning of harmful cyanobacteria blooms based on high frequency in situmonitoring and intelligible machine learning modelling: The case study of Lake Müggelsee (Germany) www.sciencedirect.com/science/arti...
Reposted by Tri Kaloudis
If you are interested, make sure to apply! I have been working with Marnix, Justin, and Daniel over the last few years and they are awesome!
We are looking for a 3-year postdoc to work with Daniel Probst, Justin van der Hooft and myself on an exciting project involving federated learning and integrative omics for discovery of new antibiotics from natural products.
Apply here: www.wur.nl/en/vacancy/p...
Please share!
Apply here: www.wur.nl/en/vacancy/p...
Please share!
www.wur.nl
September 8, 2025 at 10:09 AM
If you are interested, make sure to apply! I have been working with Marnix, Justin, and Daniel over the last few years and they are awesome!
Reposted by Tri Kaloudis
Future ocean warming may cause large reductions in Prochlorococcus biomass and productivity
www.nature.com/articles/s41...
www.nature.com/articles/s41...
Future ocean warming may cause large reductions in Prochlorococcus biomass and productivity - Nature Microbiology
Decade-long field measurements and modelling show that projected ocean temperatures could restrict cell division rates of an important marine cyanobacterium.
www.nature.com
September 8, 2025 at 6:28 PM
Future ocean warming may cause large reductions in Prochlorococcus biomass and productivity
www.nature.com/articles/s41...
www.nature.com/articles/s41...
Reposted by Tri Kaloudis
MASST searches billions of spectra in seconds, answering the question, "Where have I seen this molecule before?" in the same time it takes to ask it. Custom MASST databases tailor searches to your research questions.
Want to try it out? Check out our new tutorial: www.youtube.com/watch?v=9mga....
Want to try it out? Check out our new tutorial: www.youtube.com/watch?v=9mga....
Tutorial: Building Custom MASST Databases
YouTube video by Ometa Labs
www.youtube.com
September 8, 2025 at 6:35 PM
MASST searches billions of spectra in seconds, answering the question, "Where have I seen this molecule before?" in the same time it takes to ask it. Custom MASST databases tailor searches to your research questions.
Want to try it out? Check out our new tutorial: www.youtube.com/watch?v=9mga....
Want to try it out? Check out our new tutorial: www.youtube.com/watch?v=9mga....
Reposted by Tri Kaloudis
(ACS Anal Chem) [ASAP] Increasing the Scale of the Mass Spectrometry Query Language Compendium with Explainable AI: Analytical ChemistryDOI: 10.1021/acs.analchem.5c02591 #MassSpecRSS #ACSAChem
[ASAP] Increasing the Scale of the Mass Spectrometry Query Language Compendium with Explainable AI
Analytical ChemistryDOI: 10.1021/acs.analchem.5c02591
dlvr.it
August 25, 2025 at 5:02 PM
(ACS Anal Chem) [ASAP] Increasing the Scale of the Mass Spectrometry Query Language Compendium with Explainable AI: Analytical ChemistryDOI: 10.1021/acs.analchem.5c02591 #MassSpecRSS #ACSAChem
Reposted by Tri Kaloudis
Have you heard about the Night Science Podcast, where we talk about the actual creative process of doing science? We explore this with discussions with brilliant scientists & also philosophers and artists, to figure out the tricks of the creative scientific trade.
podcasts.apple.com/us/podcast/n...
podcasts.apple.com/us/podcast/n...
August 24, 2025 at 4:56 PM
Have you heard about the Night Science Podcast, where we talk about the actual creative process of doing science? We explore this with discussions with brilliant scientists & also philosophers and artists, to figure out the tricks of the creative scientific trade.
podcasts.apple.com/us/podcast/n...
podcasts.apple.com/us/podcast/n...
Reposted by Tri Kaloudis
Into natural product biosynthesis & tailoring enzymes? Frustrated by the lack of a dedicated resource to explore their functions? Tired of endless literature searches for reaction info? Meet the MITE database, freely available at mite.bioinformatics.nl. Preprint: doi.org/10.26434/che... (1/8)
August 21, 2025 at 10:52 AM
Into natural product biosynthesis & tailoring enzymes? Frustrated by the lack of a dedicated resource to explore their functions? Tired of endless literature searches for reaction info? Meet the MITE database, freely available at mite.bioinformatics.nl. Preprint: doi.org/10.26434/che... (1/8)
Reposted by Tri Kaloudis
Please share widely. Let's counteract the dismantling of public trust in science and research infrastructure with creativity and community.
Apply here by 9/5. Link also in bio.
bit.ly/comicscollabfall2025
Apply here by 9/5. Link also in bio.
bit.ly/comicscollabfall2025
August 20, 2025 at 8:45 PM
Please share widely. Let's counteract the dismantling of public trust in science and research infrastructure with creativity and community.
Apply here by 9/5. Link also in bio.
bit.ly/comicscollabfall2025
Apply here by 9/5. Link also in bio.
bit.ly/comicscollabfall2025
Reposted by Tri Kaloudis
If you have previously applied and have not worked with a student yet, first off, thank you for your continued interest. You are welcome to email me and I'll copy over your previous application material.
August 20, 2025 at 8:45 PM
If you have previously applied and have not worked with a student yet, first off, thank you for your continued interest. You are welcome to email me and I'll copy over your previous application material.