Salah Elias
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theeliaslab.bsky.social
Salah Elias
@theeliaslab.bsky.social
🇩🇿 🇫🇷 cell & developmental biologist
associate professor at @unisouthampton.bsky.social

stem cells, cell division, cell polarity, mammary organogenesis, breast cancer and microscopy
Pinned
Excited to share our new preprint introducing CenSegNet, a deep learning framework for high-throughput, spatially resolved and single-cell centrosome profiling in heterogeneous tissues.

A huge effort co-led by brilliant PhD students, Jiaoqi Cheng & Keqiang Fan.

1/3

www.biorxiv.org/content/10.1...
CenSegNet: a generalist high-throughput deep learning framework for centrosome phenotyping at spatial and single-cell resolution in heterogeneous tissues
Centrosome amplification (CA) is a hallmark of epithelial cancers, yet its spatial complexity and phenotypic heterogeneity remain poorly resolved due to limitations in conventional image analysis. We ...
www.biorxiv.org
Reposted by Salah Elias
🚨Our collaboration with @centriolelab.bsky.social & @gautamdey.bsky.social is out today in @cp-cell.bsky.social
We show that #Expansion #Microscopy is a broad-spectrum modality for Euks, enabling 3D phenotypic maps rooted to phylogeny.
#ProtistsOnSky #SciComm #SciSky

www.cell.com/cell/fulltex...
October 31, 2025 at 2:42 PM
Reposted by Salah Elias
So sad to hear the news - John truly was an inspiration to so many, and one of a kind.

www.cam.ac.uk/research/new...
Nobel Laureate Professor Sir John Gurdon dies aged 92
It is with great sadness that the University shares the news of the death of Professor Sir John Gurdon, founder of the Gurdon Institute.
www.cam.ac.uk
October 7, 2025 at 4:02 PM
Reposted by Salah Elias
Are you looking for a reliable strategy to quantify the architecture of mammary tissue using whole mount images?? Well, maybe you should check MaGNet, our new computational based and user friendly approach (and you probably can adapt it to other organs as well). link.springer.com/article/10.1...
MaGNet: A Network-Based Method for Quantitative Analysis of the Mammary Ductal Tree in Developing Female Mice - Journal of Mammary Gland Biology and Neoplasia
The mammary gland is a uniquely dynamic organ with a branching architecture that develops entirely after birth in response to hormonal cues. A common approach in mammary gland biology is the evaluation of branching morphogenesis to characterize the role of developmental, physiological and molecular perturbations on branching tissue invasion, growth, and maintenance. Yet, the field still lacks a fully open-sourced, quantitative framework to analyze whole-mount mammary tissue images, as a commonly utilized methodology. Here, we present MaGNet (Mammary Gland Network analysis tool), a method that leverages network theory to characterize key features of ductal branching during mammary gland development. Applying this pipeline to mammary gland images captured at three pubertal timepoints, we achieved reproducible quantification of ductal tree expansion across development. In addition, this network analysis pipeline captures ductal expansion induced by pregnancy hormones. By providing open-source tools to the research community, this method may increase reproducibility and broad applicability across diverse organ systems, model organisms, and developmental stages.
link.springer.com
September 26, 2025 at 12:43 PM
Reposted by Salah Elias
Excited to share our new preprint introducing CenSegNet, a deep learning framework for high-throughput, spatially resolved and single-cell centrosome profiling in heterogeneous tissues.

A huge effort co-led by brilliant PhD students, Jiaoqi Cheng & Keqiang Fan.

1/3

www.biorxiv.org/content/10.1...
CenSegNet: a generalist high-throughput deep learning framework for centrosome phenotyping at spatial and single-cell resolution in heterogeneous tissues
Centrosome amplification (CA) is a hallmark of epithelial cancers, yet its spatial complexity and phenotypic heterogeneity remain poorly resolved due to limitations in conventional image analysis. We ...
www.biorxiv.org
September 15, 2025 at 4:09 PM
Excited to share our new preprint introducing CenSegNet, a deep learning framework for high-throughput, spatially resolved and single-cell centrosome profiling in heterogeneous tissues.

A huge effort co-led by brilliant PhD students, Jiaoqi Cheng & Keqiang Fan.

1/3

www.biorxiv.org/content/10.1...
CenSegNet: a generalist high-throughput deep learning framework for centrosome phenotyping at spatial and single-cell resolution in heterogeneous tissues
Centrosome amplification (CA) is a hallmark of epithelial cancers, yet its spatial complexity and phenotypic heterogeneity remain poorly resolved due to limitations in conventional image analysis. We ...
www.biorxiv.org
September 15, 2025 at 4:09 PM
Reposted by Salah Elias
Pathologists have used nuclear & tissue shapes to diagnose #cancer for decades, but what is the molecular basis for this? In our latest work, we develop a computational pipeline to figure this out in #colorectalcancer! Check out 🧵& preprint #mechanobiology #stemcells www.biorxiv.org/content/10.1...
August 15, 2025 at 10:50 AM
Reposted by Salah Elias
The #PrimaryCilium dynamically assembles & disassembles, but how is this controlled? @cytolabkoc.bsky.social shows that #ciliopathy linked protein Ccdc66 regulates both #cilium stability & length in epithelial cells via microtubules, actin & vesicular trafficking @plosbiology.org 🧪 plos.io/4mdTS4A
August 1, 2025 at 8:28 AM
Reposted by Salah Elias
Thrilled to see our Kiwa story out today! A membrane-associated supercomplex that senses infection and blocks replication and transcription.

www.cell.com/cell/fulltex...

Huge congratulations to Yi and Zhiying for bringing it home, to Thomas for starting us off, and to all the collaborators.
Kiwa is a membrane-embedded defense supercomplex activated at phage attachment sites
Zhang, Todeschini, and Wu et al. show that the bacterial defense system Kiwa senses phage attachment at the membrane and assembles a transmembrane complex that halts infection by blocking phage DNA re...
www.cell.com
July 28, 2025 at 7:43 PM
A short break from paper writing, with family
July 25, 2025 at 8:37 PM
Reposted by Salah Elias
Interested in developmental epigenetics? So are we! Apply now to join us for your postdoc!

Multiple positions across multiple groups @mrc-lms.bsky.social

Projects spanning germline demethylation, gene regulation, genome architecture in development & disease 👇👇

lms.mrc.ac.uk/work/vacanci...
MRC Postdoctoral Research Scientists x 5 - MRC Laboratory of Medical Sciences
Applications are now open for up to five postdoctoral positions in the area of developmental epigenetics.
lms.mrc.ac.uk
July 14, 2025 at 5:15 PM
Reposted by Salah Elias
Proudly presenting Simon’s @simonsterson.bsky.social‬ paper on asymmetric apportioning of old mitochondria biasing intestinal stem cells for the Paneth cell linage through aKG-dependent metabolism
@naturemetabolism.bsky.social www.nature.com/articles/s42... @helsinki.fi @metastem.bsky.social 🧵1/8
Old mitochondria regulate niche renewal via α-ketoglutarate metabolism in stem cells - Nature Metabolism
Andersson et al. show that intestinal stem cells enriched for old mitochondria are metabolically distinct and have enhanced ability to regenerate the epithelial niche.
www.nature.com
July 14, 2025 at 10:21 AM
Reposted by Salah Elias
I just published: Why I’m skipping the Congress this year (And why you should still publish your posters)

Publishing your poster creates a citable record and protects you from bad actors.

#ISMPMI2025 #OpenMPMI #AcademicChatter #PhDchat

medium.com/p/why-im-ski...
Why I’m skipping the Congress this year (And why you should still publish your posters)
Publishing your poster creates a verifiable and citable record of your work. It also protects you from bad actors — the evidence will be…
medium.com
July 11, 2025 at 1:55 PM
Reposted by Salah Elias
“Want to know which papers are flawed…the ones that don’t get preprinted”

Not the first time I’ve heard people say this.
July 12, 2025 at 9:36 AM
Reposted by Salah Elias
Plz RT. We are looking for a postdoc to join our collborative project on AI-guided bioengineering of plant immune receptors @tolgaboz.bsky.social and @jiorgoskourelis.bsky.social labs: www.jobs.ac.uk/job/DNV032/r...
Research Associate in Programmable Plant Immunity at Imperial College London
Apply for the Research Associate in Programmable Plant Immunity role on jobs.ac.uk, the top job board for academic positions in higher education. View details and apply now.
www.jobs.ac.uk
July 7, 2025 at 3:01 PM
Reposted by Salah Elias
This was a fun exercise... reflecting on my accidental path into science, the questions that drive our lab @crick.ac.uk , and thoughts on building a more inclusive scientific community. Grateful for the opportunity @focalplane.bsky.social and Subhajit .
New post from 2024 #FocalPlaneCorrespondent @sdutta.bsky.social

Subhajit talks to @rashmi-priya.bsky.social about her unconventional journey into science, her fascination with organ morphogenesis & her dedication to fostering interdisciplinary collaboration.
An Interview with Dr. Rashmi Priya - FocalPlane
An Interview with Dr. Rashmi Priya - Asian Microscopists and Cell Biologists
focalplane.biologists.com
July 7, 2025 at 4:22 PM
Reposted by Salah Elias
🧵Just out !
We reveal how 4 branched epithelia—mammary, lacrimal, salivary & prostate—use a conserved YAP–Notch–p63 circuit to self-organize during development & regeneration.
Here’s the story👇
authors.elsevier.com/c/1lM285Sx5g...
Work done in @frelab.bsky.social at ‪
@institutcurie.bsky.social
July 1, 2025 at 6:39 AM
Reposted by Salah Elias
I just published: Mountains can meet: farming the desert with microbes, not fertilizers

In the harsh deserts of Southern Algeria, Nadjette Djemouai is uncovering the power of native microbes to support sustainable agriculture.

@getgenome.bsky.social 🇩🇿

kamounlab.medium.com/mountains-ca...
June 25, 2025 at 12:32 PM
Reposted by Salah Elias
June 2025 newsletter getgenome.net/network
June 25, 2025 at 8:28 AM
Reposted by Salah Elias
الباحث في التكنولوجيا الحيوية بجامعة ساوثهامبتون البروفيسور صالح إلياس للنصر: أفكر كل يوم في العودة إلى وطني وأعتبر نفسي ثمرة الجامعة الجزائرية

www.annasronline.com/%D8%B1%D9%88...
الباحث في التكنولوجيا الحيوية بجامعة ساوثهامبتون البروفيسور صالح إلياس للنصر: أفكر كل يوم في العودة إلى وطني وأعتبر نفسي ثمرة الجامعة الجزائرية
يكشف الباحث الجزائري في مجالات التكنولوجيات الحيوية بجامعة ساوثهامبتون بالمملكة المتحدة، البروفيسور صالح إلياس، في هذا الحوار مع النصر، عن رغبته في العودة إلى الوطن من أجل نقل الخبرات التي اكتسبها في ...
https://www.annasronline.com/روبورتاج/حوارات/256763-الباحث-في-التكنولوجيا-الحيوية-بجامعة-ساوثهامبتون-البروفيسور-صالح-إلياس-للنصر-أفكر-كل-يوم-في-العودة-إلى-وطني-وأعتبر-نفسي-ثمرة-الجامعة-الجزائرية
June 21, 2025 at 11:46 AM
Reposted by Salah Elias
Thank you Fatma @Sakhri23 for your expert organisation and for being such a graceful host 🙏
June 18, 2025 at 1:39 PM
Reposted by Salah Elias
I’m in Constantine 🇩🇿 thanks to a connection made years ago on Twitter, when I met Salah Elias @theeliaslab @theeliaslab.bsky.social We quickly discovered a shared passion for science—and a strong sense of community. @science_CSB @GetGenome
June 18, 2025 at 8:15 AM
Reposted by Salah Elias
We are highlighting Liz Robertson, @dev-journal.bsky.social Editor and the longest-standing Editor of @biologists.bsky.social journals, as an extraordinary biologist this week.
#100biologists
June 10, 2025 at 3:22 PM
Reposted by Salah Elias
90% of you probably don’t need to read this.
But maybe some of you are curious & 10% will feel seen. Or a little less alone. This isn’t about seeking sympathy.
It’s about sharing something hard to say out loud;
partly to heal, partly in case someone needs to hear it too. (1/3)
tinyurl.com/DudinO
Omaya Dudin
Interview with Omaya Dudin, who uses Ichthyosporea as models to study how and why unicellular organisms evolved multicellularity at the University of Geneva.
www.cell.com
June 10, 2025 at 9:41 AM
This is my land 🇩🇿
May 25, 2025 at 10:27 AM