Sean Meaden
@seanmeaden.bsky.social
Microbial ecology / evolution / genomics @ University of York
Reposted by Sean Meaden
JOB OFFER #PhageSky
We have a postdoc position opening in my group to investigate phage-MGE interactions !
We're based in the very nice city of Lyon, France @mmsb-lyon.bsky.social
Contact me for more info !
>> Apply on the CNRS webpage emploi.cnrs.fr/Offres/CDD/U...
We have a postdoc position opening in my group to investigate phage-MGE interactions !
We're based in the very nice city of Lyon, France @mmsb-lyon.bsky.social
Contact me for more info !
>> Apply on the CNRS webpage emploi.cnrs.fr/Offres/CDD/U...
Portail Emploi CNRS - Offre d'emploi - Postdoctoral researcher Microbiology (M/F)
emploi.cnrs.fr
October 22, 2025 at 9:35 AM
JOB OFFER #PhageSky
We have a postdoc position opening in my group to investigate phage-MGE interactions !
We're based in the very nice city of Lyon, France @mmsb-lyon.bsky.social
Contact me for more info !
>> Apply on the CNRS webpage emploi.cnrs.fr/Offres/CDD/U...
We have a postdoc position opening in my group to investigate phage-MGE interactions !
We're based in the very nice city of Lyon, France @mmsb-lyon.bsky.social
Contact me for more info !
>> Apply on the CNRS webpage emploi.cnrs.fr/Offres/CDD/U...
Reposted by Sean Meaden
PhD opportunity with me at University of Edinburgh linked with Forest Research, funded by E5 DTP.
On the microbial mechanisms of soil carbon cycling in tree-planted upland soils. Apply before 14th Dec. Please share with your network.
Pic: one of our Scottish sites.
e5-dtp.ed.ac.uk/project?item...
On the microbial mechanisms of soil carbon cycling in tree-planted upland soils. Apply before 14th Dec. Please share with your network.
Pic: one of our Scottish sites.
e5-dtp.ed.ac.uk/project?item...
October 17, 2025 at 3:25 PM
PhD opportunity with me at University of Edinburgh linked with Forest Research, funded by E5 DTP.
On the microbial mechanisms of soil carbon cycling in tree-planted upland soils. Apply before 14th Dec. Please share with your network.
Pic: one of our Scottish sites.
e5-dtp.ed.ac.uk/project?item...
On the microbial mechanisms of soil carbon cycling in tree-planted upland soils. Apply before 14th Dec. Please share with your network.
Pic: one of our Scottish sites.
e5-dtp.ed.ac.uk/project?item...
Reposted by Sean Meaden
I'll be writing more about this soon, but Reyme's developed a very cool culturomics workflow to enable us to understand and recreated real microbiomes from the human underarm. Corynebacterium focus in this paper. journals.asm.org/doi/full/10....
Revealing the diversity of commensal corynebacteria from a single human skin site | mSystems
This study uncovers the hidden diversity of Corynebacterium, an important yet often overlooked group of bacteria inhabiting human skin. Focusing
on the underarm and using advanced sequencing technique...
journals.asm.org
October 10, 2025 at 3:08 PM
I'll be writing more about this soon, but Reyme's developed a very cool culturomics workflow to enable us to understand and recreated real microbiomes from the human underarm. Corynebacterium focus in this paper. journals.asm.org/doi/full/10....
Reposted by Sean Meaden
🚨PhD Opportunity Alert🚨 Join me, @suzieh.bsky.social and @walllabuoglasgow.bsky.social to investigate how environment shapes anti-phage defences & prophage–prophage conflict in Pseudomonas aeruginosa.
Apply here:
www.gla.ac.uk/postgraduate...
Apply here:
www.gla.ac.uk/postgraduate...
October 1, 2025 at 7:58 PM
🚨PhD Opportunity Alert🚨 Join me, @suzieh.bsky.social and @walllabuoglasgow.bsky.social to investigate how environment shapes anti-phage defences & prophage–prophage conflict in Pseudomonas aeruginosa.
Apply here:
www.gla.ac.uk/postgraduate...
Apply here:
www.gla.ac.uk/postgraduate...
Reposted by Sean Meaden
🚨Exciting #Postdoc opportunity in the Fogg & Antson labs: 3-year post based @biologyatyork.bsky.social to explore the #StructuralBiology & mechanism of viral DNA-packaging motors using cutting-edge #Cryo-EM, biophysical and molecular approaches. Apply by 9th Oct at bit.ly/3Iz3bOu #ScienceJobs
Jobs - The University of York
bit.ly
September 23, 2025 at 11:49 AM
🚨Exciting #Postdoc opportunity in the Fogg & Antson labs: 3-year post based @biologyatyork.bsky.social to explore the #StructuralBiology & mechanism of viral DNA-packaging motors using cutting-edge #Cryo-EM, biophysical and molecular approaches. Apply by 9th Oct at bit.ly/3Iz3bOu #ScienceJobs
Reposted by Sean Meaden
I have an MRC-funded PhD project available (www.exeter.ac.uk/study/fundin...) on how warming will change the problem of AMR. Join a small and friendly group (padpadpadpad.netlify.app/about) in (sometimes) sunny Cornwall. 🧪🦠 #microsky
Please share the ad below with anyone who may be interested.
Please share the ad below with anyone who may be interested.
September 16, 2025 at 8:08 AM
I have an MRC-funded PhD project available (www.exeter.ac.uk/study/fundin...) on how warming will change the problem of AMR. Join a small and friendly group (padpadpadpad.netlify.app/about) in (sometimes) sunny Cornwall. 🧪🦠 #microsky
Please share the ad below with anyone who may be interested.
Please share the ad below with anyone who may be interested.
Reposted by Sean Meaden
Today in the AI hellscape we are building for ourselves, people are easily creating "official looking" websites of popular bioinformatics software that are not at all linked to the developers.
minimap2.com is potentially a phishing site. Please don't use anything from that website.
github.com/lh3/minimap2...
github.com/lh3/minimap2...
Phishing site : minimap2.com · Issue #1316 · lh3/minimap2
Not sure how to label this one, but I have come across a website minimap2.com which appears to be AI generated but is serving it's own copy of the Github repository. If you search the address or em...
github.com
September 15, 2025 at 8:57 AM
Today in the AI hellscape we are building for ourselves, people are easily creating "official looking" websites of popular bioinformatics software that are not at all linked to the developers.
Reposted by Sean Meaden
Really looking forward to sharing our science with Yorkshire Philosophical Society at Tempest Anderson Hall on Oct 14th - thank you to @gavinhthomas.bsky.social for the invite www.ypsyork.org/events/antib...
Antibiotics from the Abyss | Yorkshire Philosophical Society
promoting the understanding of science since 1822
www.ypsyork.org
September 10, 2025 at 5:17 PM
Really looking forward to sharing our science with Yorkshire Philosophical Society at Tempest Anderson Hall on Oct 14th - thank you to @gavinhthomas.bsky.social for the invite www.ypsyork.org/events/antib...
Reposted by Sean Meaden
closing at the end of this week!
Another PDRA position! Join our team exploring how the mammalian immune system shapes microbiome ecology & evolution, and vice versa. In collaboration with @hepworth-lab.bsky.social funded by the @wellcometrust.bsky.social
www.jobs.manchester.ac.uk/Job/JobDetai...
www.jobs.manchester.ac.uk/Job/JobDetai...
Research Associate in Microbial Ecology:Oxford Road
www.jobs.manchester.ac.uk
September 8, 2025 at 9:07 AM
closing at the end of this week!
"the assemblage used a peak of 2.18 million CPU cores"
Fair enough 🤯
Fair enough 🤯
🌎👩🔬 For 15+ years biology has accumulated petabytes (million gigabytes) of🧬DNA sequencing data🧬 from the far reaches of our planet.🦠🍄🌵
Logan now democratizes efficient access to the world’s most comprehensive genetics dataset. Free and open.
doi.org/10.1101/2024...
Logan now democratizes efficient access to the world’s most comprehensive genetics dataset. Free and open.
doi.org/10.1101/2024...
September 3, 2025 at 12:33 PM
"the assemblage used a peak of 2.18 million CPU cores"
Fair enough 🤯
Fair enough 🤯
Reposted by Sean Meaden
🌎👩🔬 For 15+ years biology has accumulated petabytes (million gigabytes) of🧬DNA sequencing data🧬 from the far reaches of our planet.🦠🍄🌵
Logan now democratizes efficient access to the world’s most comprehensive genetics dataset. Free and open.
doi.org/10.1101/2024...
Logan now democratizes efficient access to the world’s most comprehensive genetics dataset. Free and open.
doi.org/10.1101/2024...
September 3, 2025 at 8:39 AM
🌎👩🔬 For 15+ years biology has accumulated petabytes (million gigabytes) of🧬DNA sequencing data🧬 from the far reaches of our planet.🦠🍄🌵
Logan now democratizes efficient access to the world’s most comprehensive genetics dataset. Free and open.
doi.org/10.1101/2024...
Logan now democratizes efficient access to the world’s most comprehensive genetics dataset. Free and open.
doi.org/10.1101/2024...
Reposted by Sean Meaden
A new 4 year PostDoc position in our lab! Modeling + experiments to explore dynamics of carbon fixing hot-spring microbiomes. Part of an exciting multidisciplinary team with Sophie Nixon, @brockhurstlab.bsky.social & others
Please share & get in touch if interested!
tinyurl.com/e7j7bha3
Please share & get in touch if interested!
tinyurl.com/e7j7bha3
Research Associate in Microbiome Ecology:Oxford Road
www.jobs.manchester.ac.uk
August 12, 2025 at 2:59 PM
A new 4 year PostDoc position in our lab! Modeling + experiments to explore dynamics of carbon fixing hot-spring microbiomes. Part of an exciting multidisciplinary team with Sophie Nixon, @brockhurstlab.bsky.social & others
Please share & get in touch if interested!
tinyurl.com/e7j7bha3
Please share & get in touch if interested!
tinyurl.com/e7j7bha3
Reposted by Sean Meaden
We are also hiring a 4-year postdoc to study the dynamics and evolution of mobile genetic elements in the C-fixing Icelandic host-spring microbiomes
Join our exciting multidisciplinary team funded by @ukri.org BBSRC sLoLa
www.jobs.manchester.ac.uk/Job/JobDetai...
Join our exciting multidisciplinary team funded by @ukri.org BBSRC sLoLa
www.jobs.manchester.ac.uk/Job/JobDetai...
August 13, 2025 at 10:41 AM
We are also hiring a 4-year postdoc to study the dynamics and evolution of mobile genetic elements in the C-fixing Icelandic host-spring microbiomes
Join our exciting multidisciplinary team funded by @ukri.org BBSRC sLoLa
www.jobs.manchester.ac.uk/Job/JobDetai...
Join our exciting multidisciplinary team funded by @ukri.org BBSRC sLoLa
www.jobs.manchester.ac.uk/Job/JobDetai...
Reposted by Sean Meaden
Feels surreal to say but: I'm hiring! If you are or know anyone interested in looking at the evolution of phage resistance using A. baumannii and natural transformation, then this might be for you
www.jobbnorge.no/en/available...
www.jobbnorge.no/en/available...
Research position in Microbial Pharmacology and Population Biology (282139) | UiT The Arctic University of Norway
Job title: Research position in Microbial Pharmacology and Population Biology (282139), Employer: UiT The Arctic University of Norway, Deadline: Wednesday, August 27, 2025
www.jobbnorge.no
August 8, 2025 at 7:52 AM
Feels surreal to say but: I'm hiring! If you are or know anyone interested in looking at the evolution of phage resistance using A. baumannii and natural transformation, then this might be for you
www.jobbnorge.no/en/available...
www.jobbnorge.no/en/available...
Reposted by Sean Meaden
Want to name a real virus? I have recently discovered 9 new phages which now need names! To enter, you simply need to donate to the Cystic Fibrosis Trust on my JustGiving page (£2 = 1 entry) and share your email with me on donation (see link info). Please share 💚 www.justgiving.com/page/meaghan-c-1
August 5, 2025 at 12:45 PM
Want to name a real virus? I have recently discovered 9 new phages which now need names! To enter, you simply need to donate to the Cystic Fibrosis Trust on my JustGiving page (£2 = 1 entry) and share your email with me on donation (see link info). Please share 💚 www.justgiving.com/page/meaghan-c-1
Reposted by Sean Meaden
New pre-print alert! 🚨🫁
COPD affects millions worldwide. While we know bacterial dysbiosis drives disease, the role of bacteriophages remains unexplored. We re-analysed 135 COPD metagenomes to characterise the lung virome for the first time 🫁 1/9
www.biorxiv.org/content/10.1...
COPD affects millions worldwide. While we know bacterial dysbiosis drives disease, the role of bacteriophages remains unexplored. We re-analysed 135 COPD metagenomes to characterise the lung virome for the first time 🫁 1/9
www.biorxiv.org/content/10.1...
www.biorxiv.org
June 17, 2025 at 7:47 AM
New pre-print alert! 🚨🫁
COPD affects millions worldwide. While we know bacterial dysbiosis drives disease, the role of bacteriophages remains unexplored. We re-analysed 135 COPD metagenomes to characterise the lung virome for the first time 🫁 1/9
www.biorxiv.org/content/10.1...
COPD affects millions worldwide. While we know bacterial dysbiosis drives disease, the role of bacteriophages remains unexplored. We re-analysed 135 COPD metagenomes to characterise the lung virome for the first time 🫁 1/9
www.biorxiv.org/content/10.1...
Reposted by Sean Meaden
Our new paper is online in Genome Biology:
"Plasmids, prophages, and defense systems are depleted from plant microbiota genomes"
genomebiology.biomedcentral.com/articles/10....
"Plasmids, prophages, and defense systems are depleted from plant microbiota genomes"
genomebiology.biomedcentral.com/articles/10....
Plasmids, prophages, and defense systems are depleted from plant microbiota genomes - Genome Biology
Plant-associated bacteria significantly impact plant growth and health. Understanding how bacterial genomes adapt to plants can provide insights into their growth promotion and virulence functions. He...
genomebiology.biomedcentral.com
June 11, 2025 at 1:43 PM
Our new paper is online in Genome Biology:
"Plasmids, prophages, and defense systems are depleted from plant microbiota genomes"
genomebiology.biomedcentral.com/articles/10....
"Plasmids, prophages, and defense systems are depleted from plant microbiota genomes"
genomebiology.biomedcentral.com/articles/10....
Reposted by Sean Meaden
HMMER is the bedrock of genomic annotation globally, and now its funding is terminated for no reason.
@cryptogenomicon.bsky.social is now on bsky:
@cryptogenomicon.bsky.social is now on bsky:
NIH funding supporting the HMMER and Infernal software projects has been terminated. NIH states that our work, as well as all other federally funded research at Harvard, is of no benefit to the US.
May 28, 2025 at 4:25 PM
HMMER is the bedrock of genomic annotation globally, and now its funding is terminated for no reason.
@cryptogenomicon.bsky.social is now on bsky:
@cryptogenomicon.bsky.social is now on bsky:
Reposted by Sean Meaden
I *finally* get to share our work on plasmid competition– super proud to now have this on bioRxiv:
CRISPR-Cas is beneficial in plasmid competition, but limited by competitor toxin-antitoxin activity when horizontally transferred
www.biorxiv.org/content/10.1...
1/6 👇
CRISPR-Cas is beneficial in plasmid competition, but limited by competitor toxin-antitoxin activity when horizontally transferred
www.biorxiv.org/content/10.1...
1/6 👇
May 12, 2025 at 5:11 AM
I *finally* get to share our work on plasmid competition– super proud to now have this on bioRxiv:
CRISPR-Cas is beneficial in plasmid competition, but limited by competitor toxin-antitoxin activity when horizontally transferred
www.biorxiv.org/content/10.1...
1/6 👇
CRISPR-Cas is beneficial in plasmid competition, but limited by competitor toxin-antitoxin activity when horizontally transferred
www.biorxiv.org/content/10.1...
1/6 👇
Reposted by Sean Meaden
Come join us! Next week marks my 1 year anniversary at @uniofmanchester.bsky.social and I've never looked back!
Job alert ‼️
2x professorships available @uniofmanchester.bsky.social
- ecology www.jobs.manchester.ac.uk/Job/JobDetai...
- organismal biology (inc genomics, evolution etc.) www.jobs.ac.uk/job/DMI506/s...
2x professorships available @uniofmanchester.bsky.social
- ecology www.jobs.manchester.ac.uk/Job/JobDetai...
- organismal biology (inc genomics, evolution etc.) www.jobs.ac.uk/job/DMI506/s...
Senior Lecturer/Reader/Chair in Ecology:Manchester
www.jobs.manchester.ac.uk
March 28, 2025 at 9:11 AM
Come join us! Next week marks my 1 year anniversary at @uniofmanchester.bsky.social and I've never looked back!
Reposted by Sean Meaden
This was great fun during my PhD- highly recommend!
Host-Microbe Symbioses- Our favorite summer school is back! Help us spread the word!
Save the date 📅: The PhD Summer School on Host-microbe Symbioses is taking place from 6-19 of July in Oeiras, Portugal.
Registration is opening soon!
Learn more 👉 gimm.idloom.events/phd-summer-s...
@gimmfoundation.bsky.social @moorefound.bsky.social
@crc1182.bsky.social #CIFAR #CBR
Registration is opening soon!
Learn more 👉 gimm.idloom.events/phd-summer-s...
@gimmfoundation.bsky.social @moorefound.bsky.social
@crc1182.bsky.social #CIFAR #CBR
February 11, 2025 at 9:00 AM
This was great fun during my PhD- highly recommend!
Reposted by Sean Meaden
📢 New round of PhD studentships.
Open to applicants worldwide.
📅 Deadline 14th March
www.findaphd.com/phds/project...
#microsky #archaeasky #chromosome 🧬🧬🧬
@steve-quinn-lab.bsky.social @georgerheath.bsky.social
Join us in beautiful York, UK!
Open to applicants worldwide.
📅 Deadline 14th March
www.findaphd.com/phds/project...
#microsky #archaeasky #chromosome 🧬🧬🧬
@steve-quinn-lab.bsky.social @georgerheath.bsky.social
Join us in beautiful York, UK!
Life pushed to extremes: probing the mechanisms of chromosome segregation in thermophilic Archaea at University of York on FindAPhD.com
PhD Project - Life pushed to extremes: probing the mechanisms of chromosome segregation in thermophilic Archaea at University of York, listed on FindAPhD.com
www.findaphd.com
February 6, 2025 at 4:51 PM
📢 New round of PhD studentships.
Open to applicants worldwide.
📅 Deadline 14th March
www.findaphd.com/phds/project...
#microsky #archaeasky #chromosome 🧬🧬🧬
@steve-quinn-lab.bsky.social @georgerheath.bsky.social
Join us in beautiful York, UK!
Open to applicants worldwide.
📅 Deadline 14th March
www.findaphd.com/phds/project...
#microsky #archaeasky #chromosome 🧬🧬🧬
@steve-quinn-lab.bsky.social @georgerheath.bsky.social
Join us in beautiful York, UK!
Reposted by Sean Meaden
🚨We are hiring! A MRC-funded PDRA position to study novel anti-phage systems & their evolutionary dynamics in P. aeruginosa, in collaboration with @friendlymicrobe. If you are passionate about phage-bacteria interactions & evolution, apply now ! tinyurl.com/bddz4z44
January 24, 2025 at 12:07 PM
🚨We are hiring! A MRC-funded PDRA position to study novel anti-phage systems & their evolutionary dynamics in P. aeruginosa, in collaboration with @friendlymicrobe. If you are passionate about phage-bacteria interactions & evolution, apply now ! tinyurl.com/bddz4z44
Reposted by Sean Meaden
☎️ Calling #MEvoSky ☎️
2x 5-year research associate / research assistant positions in experimental evolution
ERC-funded project: How do mobile genetic elements and defence systems shape bacterial genome evolution?
Join the friendly and exciting @mermanchester.bsky.social community in Manchester!
2x 5-year research associate / research assistant positions in experimental evolution
ERC-funded project: How do mobile genetic elements and defence systems shape bacterial genome evolution?
Join the friendly and exciting @mermanchester.bsky.social community in Manchester!
🚨 Job alert 🚨 — are you interested in understanding how mobile genetic elements and defence systems shape bacterial genome evolution? 🧬 🧪 🧫 🦠 2x 5-year research positions available in experimental evolution @mermanchester.bsky.social Join us! #microsky
www.jobs.manchester.ac.uk/Job/JobDetai...
www.jobs.manchester.ac.uk/Job/JobDetai...
Research Associate in Experimental Evolution:Manchester
www.jobs.manchester.ac.uk
February 6, 2025 at 9:25 AM
☎️ Calling #MEvoSky ☎️
2x 5-year research associate / research assistant positions in experimental evolution
ERC-funded project: How do mobile genetic elements and defence systems shape bacterial genome evolution?
Join the friendly and exciting @mermanchester.bsky.social community in Manchester!
2x 5-year research associate / research assistant positions in experimental evolution
ERC-funded project: How do mobile genetic elements and defence systems shape bacterial genome evolution?
Join the friendly and exciting @mermanchester.bsky.social community in Manchester!