Reposted by Tej
🎓 Upcoming Online Course: R/Bioconductor for Mass Spectrometry & Proteomics
📅 November 17–19, 2025
Join Dr Laurent Gatto for a hands-on course on mass spectrometry–based proteomics analysis using R and Bioconductor.
👉 Register & learn more: www.physalia-courses.org/courses-work...
📅 November 17–19, 2025
Join Dr Laurent Gatto for a hands-on course on mass spectrometry–based proteomics analysis using R and Bioconductor.
👉 Register & learn more: www.physalia-courses.org/courses-work...
R/Bioconductor for Mass Spectrometry and Proteomics
Dates 17-19 November 2025 To foster international participation, this course will be held online
www.physalia-courses.org
November 6, 2025 at 10:00 AM
🎓 Upcoming Online Course: R/Bioconductor for Mass Spectrometry & Proteomics
📅 November 17–19, 2025
Join Dr Laurent Gatto for a hands-on course on mass spectrometry–based proteomics analysis using R and Bioconductor.
👉 Register & learn more: www.physalia-courses.org/courses-work...
📅 November 17–19, 2025
Join Dr Laurent Gatto for a hands-on course on mass spectrometry–based proteomics analysis using R and Bioconductor.
👉 Register & learn more: www.physalia-courses.org/courses-work...
Reposted by Tej
Need to do some cutting edge Proteomics Differential expression? Maybe give Limpa a try! Guaranteed to rise to the occasion ...despite its name !
youtu.be/vqeOT8xcycc
youtu.be/vqeOT8xcycc
Doing Differential Expression analysis on Proteomics Data using Limpa!!
YouTube video by Brett Phinney
youtu.be
October 27, 2025 at 5:03 PM
Need to do some cutting edge Proteomics Differential expression? Maybe give Limpa a try! Guaranteed to rise to the occasion ...despite its name !
youtu.be/vqeOT8xcycc
youtu.be/vqeOT8xcycc
Reposted by Tej
Some new content at GitHub:
github.com/pwilmart/pow...
We have been measuring proteomes for a long time but almost never think about our data and results at the whole proteome level. We lose a lot of information when we think one protein at a time. We need to multiplex our thinking.
github.com/pwilmart/pow...
We have been measuring proteomes for a long time but almost never think about our data and results at the whole proteome level. We lose a lot of information when we think one protein at a time. We need to multiplex our thinking.
October 27, 2025 at 11:30 PM
Some new content at GitHub:
github.com/pwilmart/pow...
We have been measuring proteomes for a long time but almost never think about our data and results at the whole proteome level. We lose a lot of information when we think one protein at a time. We need to multiplex our thinking.
github.com/pwilmart/pow...
We have been measuring proteomes for a long time but almost never think about our data and results at the whole proteome level. We lose a lot of information when we think one protein at a time. We need to multiplex our thinking.
Reposted by Tej
Are you having a LaPh? Diverse roles of Labile Phosphorylation in mammalian cells portlandpress.com/bi...
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#proteomics #prot-paper
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#proteomics #prot-paper
October 23, 2025 at 11:00 AM
Are you having a LaPh? Diverse roles of Labile Phosphorylation in mammalian cells portlandpress.com/bi...
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#proteomics #prot-paper
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#proteomics #prot-paper
"... if we're competitive from a price, thoughput and coverage perspective, the other technologies seem more than a bit silly. " That sums it up👍🏾
News in Proteomics Research blog post | The first credible quantitative analysis of 7,000 proteins in human plasma! proteomicsnews.blogs...
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#proteomics #prot-other
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#proteomics #prot-other
October 19, 2025 at 10:57 AM
"... if we're competitive from a price, thoughput and coverage perspective, the other technologies seem more than a bit silly. " That sums it up👍🏾
Reposted by Tej
Enrichment of Cysteine S-palmitoylated peptides using Sodium Deoxycholate Acid Precipitation www.mcponline.org/ar...
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#proteomics #prot-paper
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#proteomics #prot-paper
October 19, 2025 at 9:00 AM
Enrichment of Cysteine S-palmitoylated peptides using Sodium Deoxycholate Acid Precipitation www.mcponline.org/ar...
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#proteomics #prot-paper
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#proteomics #prot-paper
Reposted by Tej
Struggling to compare Bruker timsTOF methods or extract window schemes from raw .d files? I developed a free desktop tool to solve this: timsCompare! 🚀
It automates the manual work of extracting method parameters, presenting them in a structured and comparable view.
(A thread 🧵)
It automates the manual work of extracting method parameters, presenting them in a structured and comparable view.
(A thread 🧵)
October 15, 2025 at 11:01 AM
Struggling to compare Bruker timsTOF methods or extract window schemes from raw .d files? I developed a free desktop tool to solve this: timsCompare! 🚀
It automates the manual work of extracting method parameters, presenting them in a structured and comparable view.
(A thread 🧵)
It automates the manual work of extracting method parameters, presenting them in a structured and comparable view.
(A thread 🧵)
Reposted by Tej
Postdoctoral Fellow to study host-virus responses using proteomics and mass spectrometry stilling.forskning.n...
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#proteomics #prot-jobs
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#proteomics #prot-jobs
October 14, 2025 at 9:00 AM
Postdoctoral Fellow to study host-virus responses using proteomics and mass spectrometry stilling.forskning.n...
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#proteomics #prot-jobs
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#proteomics #prot-jobs
Reposted by Tej
Twenty-Five Years of High-Throughput Screening of Biological Samples with Mass Spectrometry: Current Platforms and Emerging Methods #AC pubs.acs.org/doi/10.1021/...
Twenty-Five Years of High-Throughput Screening of Biological Samples with Mass Spectrometry: Current Platforms and Emerging Methods
Robust high-throughput screening (HTS) approaches for discovering new chemical entities are desirable for research and translation. Applications for which high-throughput (HT) methods are particularly...
pubs.acs.org
October 9, 2025 at 6:44 PM
Twenty-Five Years of High-Throughput Screening of Biological Samples with Mass Spectrometry: Current Platforms and Emerging Methods #AC pubs.acs.org/doi/10.1021/...
Reposted by Tej
Boosting the speed and accuracy of protein quantification algorithms in mass spectrometry-based proteomics www.biorxiv.org/cont...
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#proteomics #prot-preprint
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#proteomics #prot-preprint
October 9, 2025 at 8:20 AM
Boosting the speed and accuracy of protein quantification algorithms in mass spectrometry-based proteomics www.biorxiv.org/cont...
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#proteomics #prot-preprint
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#proteomics #prot-preprint
Reposted by Tej
PhD Position in Experimental Mass Spectrometry-Based Proteomics | JobTeaser www.jobteaser.com/fr...
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#proteomics #prot-jobs
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#proteomics #prot-jobs
October 7, 2025 at 9:20 PM
PhD Position in Experimental Mass Spectrometry-Based Proteomics | JobTeaser www.jobteaser.com/fr...
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#proteomics #prot-jobs
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#proteomics #prot-jobs
Reposted by Tej
Okay y’all. I’m at a complete loss. DIA is better on EVERYTHING on my Ultra2 except plasma digests. Neat, PC, PCA-N. DDA (pasef) works better. Coisolation FDR artifact? Anyone else see this?
October 6, 2025 at 7:52 PM
Okay y’all. I’m at a complete loss. DIA is better on EVERYTHING on my Ultra2 except plasma digests. Neat, PC, PCA-N. DDA (pasef) works better. Coisolation FDR artifact? Anyone else see this?
Reposted by Tej
PAMPA: A Software for Peptide Markers and Taxonomic Identification for ZooMS Samples in Archaeology and Paleontology pubs.acs.org/doi/abs...
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#proteomics #prot-paper
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#proteomics #prot-paper
October 5, 2025 at 7:40 PM
PAMPA: A Software for Peptide Markers and Taxonomic Identification for ZooMS Samples in Archaeology and Paleontology pubs.acs.org/doi/abs...
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#proteomics #prot-paper
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#proteomics #prot-paper
Reposted by Tej
Finally, we're looking for someone to join our #MassSpec Core Facility to support all the protein/peptide MS & development needs of our research groups utilising:
🧪Protein chemistry
📈Liquid chromatography
⚛️Tandem mass spectrometry
🖥️Data analysis
More at:
www.cruk.manchester.ac.uk/career/mi-25...
🧪Protein chemistry
📈Liquid chromatography
⚛️Tandem mass spectrometry
🖥️Data analysis
More at:
www.cruk.manchester.ac.uk/career/mi-25...
Mass Spec
xkcd.com
October 3, 2025 at 2:17 PM
Finally, we're looking for someone to join our #MassSpec Core Facility to support all the protein/peptide MS & development needs of our research groups utilising:
🧪Protein chemistry
📈Liquid chromatography
⚛️Tandem mass spectrometry
🖥️Data analysis
More at:
www.cruk.manchester.ac.uk/career/mi-25...
🧪Protein chemistry
📈Liquid chromatography
⚛️Tandem mass spectrometry
🖥️Data analysis
More at:
www.cruk.manchester.ac.uk/career/mi-25...
Reposted by Tej
Best practices and tools in R and Python for statistical processing and visualization of lipidomics and metabolomics data #NatCommun www.nature.com/articles/s41...
Best practices and tools in R and Python for statistical processing and visualization of lipidomics and metabolomics data - Nature Communications
Mass spectrometry-based lipidomics and metabolomics generate large, complex datasets requiring effective analysis. Here, authors review key statistical and visualization methods alongside widely used R and Python tools, and provide a GitBook with step-by-step code for accessible, reproducible data analysis.
www.nature.com
October 1, 2025 at 7:14 PM
Best practices and tools in R and Python for statistical processing and visualization of lipidomics and metabolomics data #NatCommun www.nature.com/articles/s41...
Reposted by Tej
91962-Research Technician, Proteomics Core | Memorial Sloan Kettering Cancer Center careers.mskcc.org/va...
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#proteomics #prot-jobs
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#proteomics #prot-jobs
September 25, 2025 at 3:40 PM
91962-Research Technician, Proteomics Core | Memorial Sloan Kettering Cancer Center careers.mskcc.org/va...
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#proteomics #prot-jobs
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#proteomics #prot-jobs
Reposted by Tej
Exciting news - we are recruiting new Group Leaders! 🥼
We are seeking to appoint exceptional early-career scientists & clinician scientists as #GroupLeaders to develop bold, innovative, high-impact #CancerResearch programmes
Full details on our website: www.cruk.manchester.ac.uk/career/new-g...
We are seeking to appoint exceptional early-career scientists & clinician scientists as #GroupLeaders to develop bold, innovative, high-impact #CancerResearch programmes
Full details on our website: www.cruk.manchester.ac.uk/career/new-g...
Group Leader Recruitment at the Cancer Research UK Manchester Institute
YouTube video by CRUK Manchester Institute
youtu.be
September 24, 2025 at 3:03 PM
Exciting news - we are recruiting new Group Leaders! 🥼
We are seeking to appoint exceptional early-career scientists & clinician scientists as #GroupLeaders to develop bold, innovative, high-impact #CancerResearch programmes
Full details on our website: www.cruk.manchester.ac.uk/career/new-g...
We are seeking to appoint exceptional early-career scientists & clinician scientists as #GroupLeaders to develop bold, innovative, high-impact #CancerResearch programmes
Full details on our website: www.cruk.manchester.ac.uk/career/new-g...
Reposted by Tej
Are you using DIA mass spectrometry in proteomics?
We have just put this paper online: www.biorxiv.org/content/10.1...
Here, we came up with some Recommendations for Quantitative Data-Independent Acquisition (DIA) Proteomics using Controlled Quantitative Experiments (CQEs)
1/4
We have just put this paper online: www.biorxiv.org/content/10.1...
Here, we came up with some Recommendations for Quantitative Data-Independent Acquisition (DIA) Proteomics using Controlled Quantitative Experiments (CQEs)
1/4
Recommendations for Quantitative Data-Independent Acquisition (DIA) Proteomics using Controlled Quantitative Experiments (CQEs)
Advances in mass spectrometry and associated computational tools have resulted in the wide-spread adoption of Data-Independent Acquisition (DIA) for proteomics. Experiments using state-of-the-art inst...
eur03.safelinks.protection.outlook.com
September 23, 2025 at 9:44 AM
Are you using DIA mass spectrometry in proteomics?
We have just put this paper online: www.biorxiv.org/content/10.1...
Here, we came up with some Recommendations for Quantitative Data-Independent Acquisition (DIA) Proteomics using Controlled Quantitative Experiments (CQEs)
1/4
We have just put this paper online: www.biorxiv.org/content/10.1...
Here, we came up with some Recommendations for Quantitative Data-Independent Acquisition (DIA) Proteomics using Controlled Quantitative Experiments (CQEs)
1/4
Reposted by Tej
Development and Clinical Evaluation of a Multiplexed Health Surveillance Panel Using Ultra High‐Throughput PRM‐MS in an Inflammatory Bowel Disease Cohort #AngewChem onlinelibrary.wiley.com/doi/10.1002/...
Development and Clinical Evaluation of a Multiplexed Health Surveillance Panel Using Ultra High‐Throughput PRM‐MS in an Inflammatory Bowel Disease Cohort
Validating biomarkers of disease is necessary for clinical use. The Health Surveillance Panel (83 peptides from 57 proteins) was developed as a PRM assay and evaluated using the Stellar-MS platform. ...
onlinelibrary.wiley.com
September 22, 2025 at 2:40 PM
Development and Clinical Evaluation of a Multiplexed Health Surveillance Panel Using Ultra High‐Throughput PRM‐MS in an Inflammatory Bowel Disease Cohort #AngewChem onlinelibrary.wiley.com/doi/10.1002/...
Reposted by Tej
‘Lipstick on a pig’: how to fight back against a peer-review bully #Nature www.nature.com/articles/d41...
‘Lipstick on a pig’: how to fight back against a peer-review bully
Scientific societies, journals, editors and researchers are pushing back against mean-spirited peer reviews.
www.nature.com
September 20, 2025 at 3:03 PM
‘Lipstick on a pig’: how to fight back against a peer-review bully #Nature www.nature.com/articles/d41...
Reposted by Tej
Final countdown! Only 3 days to go until the YPIC Webinar #19: Transition from Academia to Start-Up.
#YPIC #Proteomics #StartUpScience #ScienceCareers #AcademicToIndustry
#YPIC #Proteomics #StartUpScience #ScienceCareers #AcademicToIndustry
September 15, 2025 at 7:12 AM
Final countdown! Only 3 days to go until the YPIC Webinar #19: Transition from Academia to Start-Up.
#YPIC #Proteomics #StartUpScience #ScienceCareers #AcademicToIndustry
#YPIC #Proteomics #StartUpScience #ScienceCareers #AcademicToIndustry
Reposted by Tej
Proteomics Webinar: DIA with FragPipe, DIA-NN, and Skyline
Presenters: Eduard Sabidó and Brendan MacLean
When: Tuesday, September 16, 8am (Pacific Time)
Register Now ... skyline.ms/project/home...
#massspec #proteomics
Presenters: Eduard Sabidó and Brendan MacLean
When: Tuesday, September 16, 8am (Pacific Time)
Register Now ... skyline.ms/project/home...
#massspec #proteomics
Start Page: /home/software/Skyline/events/2025 Webinars/Webinar 26
skyline.ms
September 15, 2025 at 8:26 AM
Proteomics Webinar: DIA with FragPipe, DIA-NN, and Skyline
Presenters: Eduard Sabidó and Brendan MacLean
When: Tuesday, September 16, 8am (Pacific Time)
Register Now ... skyline.ms/project/home...
#massspec #proteomics
Presenters: Eduard Sabidó and Brendan MacLean
When: Tuesday, September 16, 8am (Pacific Time)
Register Now ... skyline.ms/project/home...
#massspec #proteomics
Taking cue from ESCP25, tried the FAIMS std v low res and diff FAIMS voltages on Astral-Evosep zoom 80SPD using ionopticks Rapid 5x75 col. (DIANN2.0). CV -45V seemed to perform better for both 5ng and 250pg at precursor level. The story seemed a little different for CV-48V esp at lower 250pg conc..
September 14, 2025 at 3:48 PM
Taking cue from ESCP25, tried the FAIMS std v low res and diff FAIMS voltages on Astral-Evosep zoom 80SPD using ionopticks Rapid 5x75 col. (DIANN2.0). CV -45V seemed to perform better for both 5ng and 250pg at precursor level. The story seemed a little different for CV-48V esp at lower 250pg conc..
Reposted by Tej
(J Proteom Res) [ASAP] Understanding Data Analysis Steps in Mass-Spectrometry-Based Proteomics Is Key to Transparent Reporting: Journal of Proteome ResearchDOI: 10.1021/acs.jproteome.5c00287 #MassSpecRSS
[ASAP] Understanding Data Analysis Steps in Mass-Spectrometry-Based Proteomics Is Key to Transparent Reporting
Journal of Proteome ResearchDOI: 10.1021/acs.jproteome.5c00287
dlvr.it
September 3, 2025 at 11:01 PM
(J Proteom Res) [ASAP] Understanding Data Analysis Steps in Mass-Spectrometry-Based Proteomics Is Key to Transparent Reporting: Journal of Proteome ResearchDOI: 10.1021/acs.jproteome.5c00287 #MassSpecRSS
Reposted by Tej
If you are interested in scientific software engineering or experimental work in the fields of spatial and multi-modal -omics, high throughput interaction proteomics, or mass instrumentation, apply until Oct 7th! @mannlab.bsky.social
www.biochem.mpg.de/mann
imprs-ml.mpg.de/How-to-Apply
www.biochem.mpg.de/mann
imprs-ml.mpg.de/How-to-Apply
How to Apply
Learn more about our application process
imprs-ml.mpg.de
September 1, 2025 at 12:09 PM
If you are interested in scientific software engineering or experimental work in the fields of spatial and multi-modal -omics, high throughput interaction proteomics, or mass instrumentation, apply until Oct 7th! @mannlab.bsky.social
www.biochem.mpg.de/mann
imprs-ml.mpg.de/How-to-Apply
www.biochem.mpg.de/mann
imprs-ml.mpg.de/How-to-Apply