mttvst.bsky.social
@mttvst.bsky.social
Research Data advisor and educator with a passion for dataviz and Quarto. He/Him, views my own
Reposted
“Two new Cochrane reviews show strong and consistent evidence that HPV vaccines are effective in preventing cervical cancer and pre-cancerous changes, especially when given to young people before they are exposed to the virus.” cc @jackiantonovich.bsky.social
New research confirms HPV vaccination prevents cervical cancer | Cochrane
www.cochrane.org
November 28, 2025 at 2:27 PM
Reposted
Had to see for myself. Shared by @smutclyde.bsky.social, published in Nature Scientific Reports (like PLOS One, peer-reviewed [!] for soundness, not importance). The article is about AI-based autism diagnosis. Article processing charge: $2690. AI slop science: priceless
November 27, 2025 at 2:15 PM
Reposted
The stuff you find when you actually read the RCTs in a systematic review...

This paper is one of the foundational studies on vitamin D to prevent respiratory infections in kids. Cited 1,400 times as per Google Scholar.
November 26, 2025 at 9:15 PM
Reposted
Want to make your research data open and FAIR? Join a webinar on the KTH Data Repository — now with support for larger uploads and DOIs. No registration needed, just join us in Zoom!

🗓 Fri Nov 28, 11:00–12:00 (CET), Zoom

www.kth.se/en/bibliotek...
Manage your research – KTH Data Repository for research data | KTH
This webinar introduces the KTH Data Repository and walks you through how you can use it to make your research data accessible and FAIR.
www.kth.se
November 26, 2025 at 7:47 AM
Reposted
This week, we’re hosting colleagues from research libraries across Sweden at KTH Library for a network meetup on The Educational Role of Research Libraries.

Some parts of the program will be available via Zoom - feel free to join if you’re interested: www.kth.se/biblioteket/...

#ResearchSupport
November 27, 2025 at 7:36 AM
Reposted
🗨️ Just published in Nature Biotechnology: Our CellWhisperer AI enables chat-based analysis of single-cell sequencing data. You can talk to your cells & figure out the biology without writing any computer code. Paper here: www.nature.com/articles/s41.... Annotated walkthrough in a thread below (1/11)
November 11, 2025 at 12:52 PM
Reposted
DataLumos is a crowd-sourced archive for valuable government data resources-- so you can store a copy of governmental data in this repository for free! Then you'll have a DOI to cite the data and you know it will be preserved.

Learn more: www.icpsr.umich.edu/sites/datalu...
November 10, 2025 at 5:15 PM
Reposted
Idag startar klimatmötet COP30 i Brasilien. Flera av våra forskare är på plats bl a Gustaf Hugelius @bolincentre.bsky.social för att lansera rapport om kryosfären, Adrienne Sörbom som forskar om hur tankesmedjor påverkar klimatpolitik & forskare @sthlmresilience.bsky.social
www.su.se/nyheter/cop3...
COP30: Stockholms universitet på plats i Brasilien - Stockholms universitet
COP30 i Brasilien är FN:s 30:e toppmöte om klimatet. Mötet är det tionde sedan Parisavtalet och fokuserar på att utvärdera resultatet av de mål som sattes upp för att begränsa global uppvärmning. På p...
www.su.se
November 10, 2025 at 7:57 AM
Reposted
Would you like to see your data but find it hard to create visualizations of it? Tomorrow we will host a webinar where
@mttvst.bsky.social
will explain his approach to exploratory datavisualization.
www.kth.se/en/bibliotek...
#KungligaTekniskaHogskolan #researchdata #dataviz
November 6, 2025 at 9:19 AM
Reposted
Publishing research data is becoming common. Research data is an important research output.
But finding outputs other than traditional articles is still not easy.
We're looking into how we, as a university library, can find different outputs created by KTH researchers.
#KungligaTekniskaHogskolan
November 3, 2025 at 12:58 PM
Reposted
arXiv will no longer accept review articles and position papers unless they have been accepted at a journal or a conference and complete successful peer review.

This is due to being overwhelmed by a hundreds of AI generated papers a month.

Yet another open submission process killed by LLMs.
Attention Authors: Updated Practice for Review Articles and Position Papers in arXiv CS Category – arXiv blog
blog.arxiv.org
November 1, 2025 at 5:28 PM
Reposted
Dropping a beta version of this page while everyone is up and processing baseball!

This tool lets you search the full text of papers from the American Economic Review, American Economic Journal series, and over 30,000 NBER working papers.

paulgp.com/econlit-pipe...
Economics Literature Search
Full-text search across 15,000+ papers from top economics journals and NBER working papers. Track how empirical methods have evolved over time.
paulgp.com
November 2, 2025 at 4:43 AM
Reposted
We have progressed from data collection to data analysis.
November 1, 2025 at 12:31 AM
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The problems were so pervasive they abandoned their review and instead began investigating how widespread image duplication was in their field.

Widespread image reuse, manipulation uncovered in animal studies of brain injury
Widespread image reuse, manipulation uncovered in animal studies of brain injury
One of the papers in the analysis contained a figure (bottom) found to have overlap with other work by the same author (top). Both papers have been retracted. Annotated images: PubPeer More than 20…
retractionwatch.com
October 30, 2025 at 9:21 PM
Reposted
📊 Stop analyzing just the data you can see; become a Data Detective.

This active investigative practice focuses on uncovering missing, partial, or deliberately obscured datasets to reveal the power dynamics and structural inequalities hidden within society.

nightingaledvs.com/exploring-da...
Exploring Data Detective Practices as a Class Activity, Nightingale
Figure 1.
nightingaledvs.com
October 24, 2025 at 4:31 PM
Reposted
Open-Source and FAIR in relation to Proteomics to speed up research and innovation, from KTH (@lukaskall.bsky.social) and others

pubs.acs.org/doi/10.1021/...
Open-Source and FAIR Research Software for Proteomics
Scientific discovery relies on innovative software as much as experimental methods, especially in proteomics, where computational tools are essential for mass spectrometer setup, data analysis, and interpretation. Since the introduction of SEQUEST, proteomics software has grown into a complex ecosystem of algorithms, predictive models, and workflows, but the field faces challenges, including the increasing complexity of mass spectrometry data, limited reproducibility due to proprietary software, and difficulties integrating with other omics disciplines. Closed-source, platform-specific tools exacerbate these issues by restricting innovation, creating inefficiencies, and imposing hidden costs on the community. Open-source software (OSS), aligned with the FAIR Principles (Findable, Accessible, Interoperable, Reusable), offers a solution by promoting transparency, reproducibility, and community-driven development, which fosters collaboration and continuous improvement. In this manuscript, we explore the role of OSS in computational proteomics, its alignment with FAIR principles, and its potential to address challenges related to licensing, distribution, and standardization. Drawing on lessons from other omics fields, we present a vision for a future where OSS and FAIR principles underpin a transparent, accessible, and innovative proteomics community.
pubs.acs.org
October 10, 2025 at 12:30 PM
Reposted
Aaron Tay on how search for information is impacted when access to abstracts in open publication data sources decreases.
#OpenResearchInformation #MusingsAboutLibrarianship
aarontay.substack.com/p/the-petrol...
The Petrol Tank for AI Discovery Might be Running Dry as Publishers close access to scholarly content such as abstracts due to AI incentives
Elicit.com, Consensus, and Undermind.ai are among the new leading comprehensive cross-disciplinary “AI-powered academic search engines” today.
aarontay.substack.com
September 29, 2025 at 2:44 PM
Reposted
In addition to visual representation of complex data, layers of sound can help understand objects' attributes and relations to other objects. This demo from researchers at KTH shows an example of sonification using bibliometric data.
#sonification #kth
zenodo.org/records/1519...
Interactive sonification of bibliometric data: the case of publications within the field of sonification and auditory display - DEMO
zenodo.org
September 30, 2025 at 2:39 PM
Reposted
🚨 Exciting to share our recent global team effort on "A standardized framework for circulating blood proteomics" that just came out in Nature Genetics: rdcu.be/eHK4v.
A standardized framework for circulating blood proteomics
Nature Genetics - The field of blood proteomics faces an upsurge of data with the challenge of cross-study comparisons. This Perspective offers an in-depth analysis and proposes reference materials...
rdcu.be
September 23, 2025 at 10:46 AM
Reposted
Early career women researchers at KTH?
Check out this call for abstracts!
Women on PhD network at KTH and the KTH Library are putting together a mini conference.
Come show off your awesome work - Women Shape Science!
#PhDstudent #KungligaTekniskaHögskolan #SciComm #WomenInScience
September 23, 2025 at 7:54 AM
Reposted
How much of a difference does openess make? Not an easy question to answer, but this preprint analyzing the data from the French open science monitor indicates that open science practices really can improve the reach and the impact of your research! #openscience #opensciencemonitoring
The Committee for Open Science is proud to announce the publication of a preprint that demonstrates, for the first time on a scale of a country, France, that #Openscience could increase the chances for researchers to be cited.
www.ouvrirlascience.fr/for-the-firs...
September 22, 2025 at 7:43 AM
Reposted
Do you want to join the CodeRefinery workshop? It’s not too late!
Are you also based in Stockholm, and would like to join us on-site for the exercises? KTH Library will host a room where we can follow the workshop and work together.

www.kth.se/en/bibliotek...
August 27, 2025 at 1:46 PM
Reposted
Killing MIT seems dumb to me
July 11, 2025 at 12:11 AM
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‼️ Job alert 🚨: I have an open 3-year postdoc position in my lab to develop novel crosslinking mass spectrometry workflows. 🧪🧪 So if you want to do cool stuff in protein MS, please apply ! ⬇️ Please RT
www.verwaltung.uni-halle.de/dezern3/Auss...

#Academicsky
#Chemsky
#teammassspec
www.verwaltung.uni-halle.de
June 25, 2025 at 12:44 PM