松田豊(Yutaka Matsuda)-ADC Chemist-
matsudaphdphd.bsky.social
松田豊(Yutaka Matsuda)-ADC Chemist-
@matsudaphdphd.bsky.social
Posting about antibody-drug conjugates (ADC), biopharma, and organic synthesis. I'm an ADC Chemistry Director in a U.S. pharma company, with a background in AJICAP and Exo-linker development, two Ph.D.s, and an MBA. Views are my own.
This review analyzes therapeutic mAbs and Fc-fusion proteins with International Nonproprietary Names (INN) by collecting and examining data from the WHO INN list and three other databases.
www.tandfonline.com/doi/full/10....
Systematic analysis of the varied designs of 819 therapeutic antibodies and Fc fusion proteins assigned international nonproprietary names
By combining and cross-checking data from the World Health Organization’s lists of international nonproprietary names with three other databases, we assembled a dataset of amino acid sequences of 8...
www.tandfonline.com
February 1, 2025 at 3:24 AM
The L234S/L235T/G236R mutation can achieve nearly complete Fc silencing and has been reported to exhibit lower affinity compared to LALA, LALAPG, and aglycosyl variants. (PLOS ONE)
journals.plos.org/plosone/arti...
Fc-engineered antibodies with immune effector functions completely abolished
Elimination of the binding of immunoglobulin Fc to Fc gamma receptors (FcγR) is highly desirable for the avoidance of unwanted inflammatory responses to therapeutic antibodies and fusion proteins. Man...
journals.plos.org
February 1, 2025 at 3:19 AM
A **Bioconjugate Chem** paper presents a solid-phase synthesis of Val-Ala-PAB-MMAE, simplifying high-potency compound handling. Using a disulfide-tethered resin and alanine-based elongation, the method eliminates purification steps, enhancing efficiency and safety. (pubs.acs.org/doi/10.1021/...)
Late-Stage Desulfurization Enables Rapid and Efficient Solid-Phase Synthesis of Cathepsin-Cleavable Linkers for Antibody–Drug Conjugates
The synthesis of linker-payloads is a critical step in developing antibody-drug conjugates (ADCs), a rapidly advancing therapeutic approach in oncology. The conventional method for synthesizing cathep...
pubs.acs.org
February 1, 2025 at 3:09 AM
PEGylation improves drug solubility, extends circulation, and reduces immunogenicity. This review summarizes PEGylation strategies, clinical applications, and impacts. Open access.
aiche.onlinelibrary.wiley.com/doi/10.1002/...
PEGylated therapeutics in the clinic
The covalent attachment of polyethylene glycol (PEG) to therapeutic agents, termed PEGylation, is a well-established and clinically proven drug delivery approach to improve the pharmacokinetics and p....
aiche.onlinelibrary.wiley.com
February 1, 2025 at 2:58 AM
Another open access article on PEG (Bioconjugate Chem). Cyclic and linear PEG were introduced into proteins (using lysozyme as a model) and compared. The main finding: cyclic PEG has a smaller hydrodynamic radius and lower viscosity.
pubs.acs.org/doi/full/10....
Comparison of Cyclic and Linear PEG Conjugates
Bioconjugation of polymers to proteins is a method to impart improved stability and pharmacokinetic properties to biologic systems. However, the precise effects of polymer architecture on the resultin...
pubs.acs.org
February 1, 2025 at 2:56 AM
This paper covers UF/DF in ADC purification, including key parameters, impurity removal, challenges, and new technologies. It’s a great resource on industry standards and a valuable read since ADC process studies are limited.
pubs.acs.org/doi/10.1021/...
Strategies for UF/DF-Based Impurity Removal in the Post-conjugation Purification of Antibody–Drug Conjugates
Antibody–drug conjugates (ADCs) are increasingly prevalent as investigational and marketed treatments for a variety of cancers and other diseases. The structures of most ADCs comprise a small-molecule component (the drug-linker) chemically conjugated to a monoclonal antibody, and this hybrid construct presents a number of challenges for Chemistry, Manufacturing, and Controls (CMC) development. A Small Molecule Considerations for ADC Development Working Group (WG) has been established within the IQ Consortium to serve as a forum for biopharmaceutical industry companies to discuss development strategies for ADCs, with a focus on the drug-linker portion. The preceding paper from the WG presented results from a benchmarking survey of IQ member companies on a number of topics relating to drug-linker development. One of the key findings was that ultrafiltration/diafiltration (UF/DF) is used by all responding companies for purification of the ADC following the conjugation step and is a critical operation for control of small-molecule impurities in the ADC drug substance. UF/DF is well established in monoclonal antibody processing, but to date, there are relatively few literature reports detailing its application to ADCs. To help address this gap, this manuscript presents results and analysis from a more focused survey of IQ member companies on the application of UF/DF for post-conjugation purification of ADCs. Insight is provided into practical considerations such as common operating parameters, relative efficiency of removal of different types of impurities, technical challenges, and application of emerging technologies. In addition, recommendations are offered on where to start when developing a UF/DF process for a new ADC. The overall goals are to provide an overview of current industry practices for UF/DF purification of ADCs and to spur further communication and innovation in this area.
pubs.acs.org
February 1, 2025 at 2:47 AM
A comprehensive paper from Zymeworks on the SAR of their Topo1 inhibitor and the discovery of lead compound ZD06519, including ADC synthesis. It's an excellent resource for understanding CPT-based compounds.
aacrjournals.org/mct/article/...
Design and Evaluation of ZD06519, a Novel Camptothecin Payload for Antibody Drug Conjugates
Abstract. In recent years, the field of antibody drug conjugates (ADC) has seen a resurgence, largely driven by the clinical benefit observed in patients treated with ADCs incorporating camptothecin-b...
aacrjournals.org
February 1, 2025 at 2:04 AM

The "NIH BioArt Source" is a public domain illustration site that offers bio-related illustrations for free use. A great resource for anyone in need of high-quality visuals for scientific presentations, publications, or educational materials!
bioart.niaid.nih.gov
Bioart
bioart.niaid.nih.gov
January 26, 2025 at 8:36 AM
An open-access review summarizing the role of arginine in protein formulation. It highlights arginine's ability to enhance solubility, reduce buffer viscosity (critically important in TFF processes), and solve various formulation challenges.
January 26, 2025 at 7:55 AM
If Cathepsin D remains as a CHO host cell protein (HCP), it can cleave antibodies even at trace levels. Since Protein A purification may not completely remove it, optimizing the washing steps and identifying residual HCPs are crucial for ensuring product quality.
January 26, 2025 at 7:53 AM
A particularly valuable feature is its comprehensive coverage of reaction rates, making it a highly useful reference for reaction development introductions and various applications. It's a must-read for chemists working in reaction development or bioconjugation, and broadly recommended.
January 26, 2025 at 7:49 AM
A comprehensive review summarizing E3 ligases used in PROTACs. It's intriguing to explore which of these ligases could be adaptable for DACs (linkerable ones), offering potential directions for further development.
www.sciencedirect.com/science/arti...
The impact of E3 ligase choice on PROTAC effectiveness in protein kinase degradation
Proteolysis targeting chimera (PROTACs) provide a novel therapeutic approach that is revolutionizing drug discovery. The success of PROTACs largely de…
www.sciencedirect.com
January 26, 2025 at 7:46 AM
This study addresses the dual nature of Fcγ interactions in antibodies—providing benefits like ADCC activity but also drawbacks like Fcγ-mediated uptake. The authors successfully reduced interchain disulfide bonds in the antibody and introduced PEG to suppress Fcγ interactions.
January 26, 2025 at 7:44 AM
Using anti-payload antibodies to mitigate the toxicity of ADCs. Published in Molecular Cancer Therapeutics
aacrjournals.org/mct/article/...
Payload-Binding Fab Fragments Increase the Therapeutic Index of MMAE Antibody–Drug Conjugates
Abstract. Monomethyl auristatin E (MMAE) is a potent tubulin inhibitor that is used as the payload for four FDA-approved antibody–drug conjugates (ADC). Deconjugated MMAE readily diffuses into untarge...
aacrjournals.org
January 26, 2025 at 7:35 AM
A comprehensive review of methodologies for creating multi-ADCs. The paper assesses various site-selective modification strategies and discusses which combinations of techniques are most effective. Highly recommended for researchers planning to expand into dual ADC development.
January 26, 2025 at 7:34 AM

Evaluation of Double Self-Immolative Linker-Based Antibody–Drug Conjugate FDA022-BB05 with Enhanced Therapeutic Potential
pubs.acs.org/doi/abs/10.1...
Evaluation of Double Self-Immolative Linker-Based Antibody–Drug Conjugate FDA022-BB05 with Enhanced Therapeutic Potential
Typical antibody–drug conjugates (ADCs) with valine–alanine linkage, often conjugated with the amino group in payloads, face challenges when interacting with hydroxyl group-containing payloads. Herein, we introduced a transformative Val–Ala-based double self-immolative linker-payload platform, reshaping ADCs by optimizing hydroxyl group-containing payload integration. Utilizing this platform, FDA022-BB05 was successfully conjugated with the hydroxyl group-containing payload DXd using trastuzumab (FDA022) as the monoclonal antibody (mAb). FDA022-BB05 demonstrated enhanced stability, effective cathepsin B sensitivity, reduced cell proliferation, increased bystander killing, and targeted delivery. Notably, acute toxicity evaluations in diverse preclinical models indicated favorable safety profiles and tolerability, with a broad therapeutic index in HER2-positive and -negative xenografts. Overall, these compelling findings support the promising therapeutic potential of FDA022-BB05, emphasizing the significance of diverse linker-payload platform strategies. This ADC is a valuable addition to targeted cancer therapy development, currently advancing through phase I clinical trials.
pubs.acs.org
January 26, 2025 at 7:32 AM
Mukaiyama redox condensation at room temperature. Thiol esters can be introduced at the C-terminus of peptides on resin, compatible with the Fmoc-SPPS protocol. This one-step synthesis allows easy access to intermediates for native chemical ligation of peptides and proteins.
January 26, 2025 at 7:28 AM
A review on macrocycle construction in drug discovery, surveying the past 10 years and highlighting examples of macrocyclic drug candidates developed. Published in JMC.
pubs.acs.org/doi/abs/10.1...
The Missing Link(er): A Roadmap to Macrocyclization in Drug Discovery
Macrocycles are one of nature’s preferred choices to generate large but cell-permeable bioactive molecules. Macrocyclization is increasingly prominent in medicinal chemistry beyond natural products, especially for difficult-to-drug targets. However, strategies to best exploit the potential of macrocycles are only beginning to emerge. Here we survey drug discovery campaigns from the past decade that cumulated in advanced macrocyclic drug-like compounds or drug candidates. Most macrocycles were conceived by ring closing based on U- or C-shaped bioactive conformations observed in co-crystal structures. We focus on the key step from linear precursors to the first macrocycle and the follow-up optimization of the resulting macrocyclic scaffold. Conformational control recurrently emerged as a key factor for macrocycle properties and linkers as an opportunity for optimization. With increasingly challenging drug targets, we expect these trends to become more prominent and relevant.
pubs.acs.org
January 26, 2025 at 7:26 AM
A synthetic enzyme incorporating p-boronophenylalanine enabled a Friedel-Crafts reaction with high yield and excellent enantioselectivity. By combining this enzymatic reaction with palladium-catalyzed dearomatizing allylation, the efficient synthesis of spiroindolenine compounds was achieved.
January 26, 2025 at 7:24 AM
P-boronophenylalanine, a non-natural amino acid, can be genetically introduced into proteins. I didn’t realize this was reported as far back as 2008. It’s fascinating that it can also be used for Suzuki coupling. Quite interesting—published in Angewante.
onlinelibrary.wiley.com/doi/abs/10.1...
A Genetically Encoded Boronate‐Containing Amino Acid
A biological boronate: An orthogonal tRNA/aminoacyl-tRNA synthetase pair has been evolved for the genetic incorporation of a boronic acid into proteins. This amino acid has been used to purify protei...
onlinelibrary.wiley.com
January 26, 2025 at 7:23 AM
A review on camptothecin (CPT) derivatives:

Covers the Topo1 inhibition mechanism of CPT and key challenges in drug development.
Discusses structural modifications to overcome CPT’s limitations.
Includes drug delivery system (DDS) strategies.
Published in JMC
pubs.acs.org/doi/10.1021/...
Unleashing the Potential of Camptothecin: Exploring Innovative Strategies for Structural Modification and Therapeutic Advancements
Camptothecin (CPT) is a potent anti-cancer agent targeting topoisomerase I (TOP1). However, CPT has poor pharmacokinetic properties, causes toxicities, and leads to drug resistance, which limit its cl...
pubs.acs.org
January 26, 2025 at 7:16 AM
The Spring group at Cambridge University, known for their work on ADCs and bioconjugation methods, has developed a new spacer to replace PAB. It's a smart approach, as there are few self-immolative spacers that can release amide-type payloads effectively.
onlinelibrary.wiley.com/doi/10.1002/...
Unlocking Amides: A General Method for the Self‐Immolative Release of Amide‐Containing Molecules
Methodologies for the self-immolative release of amide motifs remain scarce despite the prevalence of amides in molecules. Herein, is presented a general and comprehensive strategy for the selective ...
onlinelibrary.wiley.com
January 26, 2025 at 7:10 AM