John Burke
jburkevic.bsky.social
John Burke
@jburkevic.bsky.social
Professor at the University of Victoria. Structural biologist studying phosphoinositides, membrane signalling, and nanobodies using HDX-MS, x-ray crystallography and cryo EM
Cool new paper (www.jbc.org/article/S002... from my lab spearheaded by graduate students Sushant @sushantsuresh.bsky.social and Alex @alexlouiseshaw.bsky.social . This was a very cool collaboration with the Scott Hansen, Jennifer Cobb, Tamas Balla labs
www.jbc.org
November 5, 2025 at 10:31 PM
Reposted by John Burke
A while back we found that the lipid-binding protein PLEKHA4 boosts Wnt/β-catenin signaling and drives melanoma growth in vivo. Now, we (Nathan Frederick) identify small-molecule inhibitors of PLEKHA4 & related proteins with anticancer activity in vitro! pubs.acs.org/doi/10.1021/....
Discovery, Optimization, and Anticancer Activity of Lipid-Competitive Pleckstrin Homology Domain-Containing Family A Inhibitors
Phosphoinositide signaling is a major cellular mechanism controlling cancer cell viability, proliferation, and survival. Yet, inhibition of lipid kinases that produce oncogenic phosphoinositides has afforded only a limited number of efficacious drugs attributed in large part to on-target toxicity resulting from the pleiotropic effects of these signaling lipids. Targeting the specific phosphoinositide effector pathways via competitive inhibitors of phosphoinositide-recognizing pleckstrin homology (PH) domains represents a relatively unexplored means to achieve greater specificity. Herein, we present the discovery from in silico screening, structure–activity relationship (SAR) optimization, and cellular characterization of novel phosphoinositide-competitive inhibitors of the pleckstrin homology domain-containing A (PLEKHA) family. These compounds induce cytotoxic effects in BRAF and NRAS mutant melanoma cells, consistent with on-target inhibition, and the most potent compound is activated by endogenous esterase activity, suggesting that prodrug esters represent a viable strategy for targeting the phosphoinositide-binding pockets of the PLEKHA family of PH domains.
pubs.acs.org
October 7, 2025 at 4:06 PM
Just spent an hour trying to get chatgpt to write a custom zotero script for me. Not super worried about AGI coming anytime soon...
October 16, 2025 at 12:29 AM
Great visit to the university of torino for a seminar, fun science and great food with good friends
October 9, 2025 at 10:20 PM
New review out from my lab on class I PI3Ks www.sciencedirect.com/science/arti..., was fun to write where we are and where we are going in PI3K research
Great work from Isobel and Alex in my lab @alexlouiseshaw.bsky.social
Molecular basis for regulation of the class I phosphoinositide 3-kinases (PI3Ks), and their targeting in human disease
The class I phosphoinositide 3-kinase pathway (PI3K) is a master regulator of cellular growth, and plays essential roles in controlling immune cell fu…
www.sciencedirect.com
September 10, 2025 at 10:07 PM
Reposted by John Burke
Announcing our new PA biosensor, PILS-Nir1 – seen here in HeLa cells during PLC activation #lipidtime #phospholipids

Read the OA paper in JCB
September 10, 2025 at 7:56 PM
Reposted by John Burke
How do swelling lysosomes not burst? Because they literally suck more lipids into their membranes from the ER via this protein straw. Amazing piece of this particular molecular puzzle from my colleague jay tab!
August 22, 2025 at 1:49 AM
Reposted by John Burke
Have you published lipid-protein interactome data? Please let us know, we’d love to include it in the repository. The goal is to build a centralized hub for the scientific community.

Huge thanks to Gaelen Guzman, a graduate student/postdoc in the lab who built it from scratch.
August 12, 2025 at 2:13 PM
Reposted by John Burke
New review out with @jburkevic.bsky.social!
We highlight recent advances in our understanding of the role the phosphoinositide PIP3 plays in regulating the protein kinases Akt, PDK1, and BTK from a structural perspective.
#kinase #phosphoinositides

portlandpress.com/biochemsoctr...
Molecular insight on the role of the phosphoinositide PIP3 in regulating the protein kinases Akt, PDK1, and BTK
Protein kinases are master regulators of myriad processes in eukaryotic cells playing critical roles in growth, metabolism, cellular differentiation, and motility. A subclass of protein kinases is reg...
portlandpress.com
July 7, 2025 at 10:15 PM
Reposted by John Burke
Excited to share our new preprint 🥳. We dev’ed a high-affinity nanobody that binds MR1 & blocks MR1-restricted T cell activation, a powerful tool to dissect MR1 biology in infection, inflammation & cancer. @jburkevic.bsky.social @ohsunews.bsky.social

www.biorxiv.org/content/10.1...
June 18, 2025 at 11:03 PM
Reposted by John Burke
Check out the view today from the venue—scoping for the IUBMB Focussed meeting on (pseudo)kinases! Abstracts and early bird registrations closes this week!

www.ivvy.com.au/event/IUBMB25/

@pseudokinase.bsky.social @iubmb.bsky.social
June 17, 2025 at 4:41 AM
Reposted by John Burke
Only one week left to submit your abstract and register at early bird rates for the IUBMB Focussed Meeting - (pseudo)kinases in signal transduction. Sign up and register by June 20!! Join @pseudokinase.bsky.social Natalia Jura, and a who's who of kinase research!

www.ivvy.com.au/event/IUBMB25/
June 12, 2025 at 9:01 PM
Reposted by John Burke
We have some #lipids talks at #asbmb25 on PI signaling that will blow your mind! Join us Sunday at 9 a.m. in room W179
April 12, 2025 at 4:37 PM
Reposted by John Burke
SCAM ALERT. This is a fake conference that ripped off my and other people’s names to trick people into registering. There is no such conference that I or the others shown were invited or agreed to. We are working to try to get this fraud taken down from the web.

chemsymposia.com
Join Chemsymposia 2026: Research & Innovation | ChemSymposia 2026
Join us at Chemsymposia 2026 to discover groundbreaking research in physics applications. Connect with experts, engage in insightful discussions, and explore our venue, registration details, and speak...
chemsymposia.com
April 11, 2025 at 4:35 PM
A really exciting new preprint out from the Jura and Verba labs looking at conformational dynamics of PI3K on membrane surfaces using cryo-EM. This is truly groundbreaking, and provides a ton of exciting insight into PI3K activation
www.biorxiv.org/content/10.1...
Structures of the PI3Kα/KRas complex on lipid bilayers reveal the molecular mechanism of PI3Kα activation
PI3Kα is a potent oncogene that converts PIP2 to PIP3 at the plasma membrane upon activation by receptor tyrosine kinases and Ras GTPases. In the absence of any structures of activated PI3Kα, the mole...
www.biorxiv.org
April 3, 2025 at 6:21 PM
New work out from my lab by my graduate student Isobel in collaboration with Josh Pemberton and Tamas Balla. Provides some new cool tools to manipulate PI3,5P2 levels, as well as some new insight into PIKfyve regulation.
rupress.org/jcb/article-...
An advanced toolset to manipulate and monitor subcellular phosphatidylinositol 3,5-bisphosphate
In this paper, Pemberton et al. describe the generation and characterization of an engineered active fragment of the PIKfyve enzyme and its use to generate
rupress.org
March 31, 2025 at 4:22 PM
Reposted by John Burke
Really exciting to share the peer-reviewed version of our study of the DET1 adaptor for the CUL4 Ub ligase. A cryptic E2-binding site and recruitment mechanism for COP1—another E3!

www.science.org/doi/10.1126/...
DET1 dynamics underlie cooperative ubiquitination by CRL4DET1-COP1 complexes
A dynamic substrate adapter (DET1) recruits COP1 to Cullin ubiquitin ligase complexes assisted by a noncatalytic E2 enzyme.
www.science.org
February 26, 2025 at 9:04 PM
Reposted by John Burke
I'm looking forward to this Signalling Symposium which celebrates the achievements of Len Stephens and Phill Hawkins during their 30-yr tenure at the Babraham Institute @babrahaminst.bsky.social
Registration details below
📢 Calling all Signallers! Join us for this celebratory smorgasbord of signalling research on 1-2 May with sessions on #proteostasis, #PI3K, #autophagy, #redox biology and #nuclear signalling. 🧪

Latest Institute research with special guests ⤵️

www.eventbrite.co.uk/e/cellular-s...
Cellular signals for health & disease
A symposium marking the contributions of Len Stephens and Phillip Hawkins
www.eventbrite.co.uk
February 12, 2025 at 2:54 PM
Reposted by John Burke
The most frequently asked question we get: do #lipidtime genetically encoded lipid biosensors compete out cells’ native effector proteins?

Victoria Holmes and Morgan Ricci led a paper in JCB that answers this question:

rupress.org/jcb/article/...

Read on for a brief thread.
Single-molecule lipid biosensors mitigate inhibition of endogenous effector proteins | Journal of Cell Biology | Rockefeller University Press
Holmes and colleagues show that AKT activation is blocked by commonly used PIP3 biosensors, but that this can be overcome by expressing biosensors at singl
rupress.org
February 11, 2025 at 4:03 PM
Reposted by John Burke
Exciting to open registration for the IUBMB Focussed Meeting on Emerging roles of (pseudo)kinases! Fantastic speakers in an unmatched location, lots of speaking slots available for ECRS.
Interested in kinases or pseudokinases? We would love to see you in Queenstown!

www.ivvy.com.au/event/IUBMB2...
January 29, 2025 at 7:09 AM
new paper using an optopharmacology approach to target the opioid receptor gpcr out in biorxiv today. This will be a perfect addition to the teaching of the gpcr section of my 4th year course. www.biorxiv.org/content/10.1...
Fun fact I worked in Dirk Trauner’s lab during my senior year at Berkeley
An opioid efficacy switch for reversible optical control of peripheral analgesia
The mu-opioid receptor (MOR) is a major target for the treatment of pain. However, opioids are prone to side effects which limit their effectiveness as analgesics and can lead to opioid use disorders ...
www.biorxiv.org
December 21, 2024 at 8:02 AM
First post up, sharing some cool work from my lab by @alexlouiseshaw.bsky.social and @sushantsuresh.bsky.social out today in Science Advances (www.science.org/doi/10.1126/...)
Molecular basis for plasma membrane recruitment of PI4KA by EFR3
The structure of the EFR3A-PI4KA complex reveals insight into PI4KA membrane localization and its role in human disease.
www.science.org
December 20, 2024 at 7:05 PM