Claudio Díaz-García
@cladigar.bsky.social
29. Bioinformatician. Predoc at the Infectious Diseases Lab (Hospital Ramón y Cajal, IRYCIS) interested in the microbiome and HIV from a multi-omics integration perspective. Opinions are my own.
Reposted by Claudio Díaz-García
🥁 We haven't run in-person mixOmics workshops for a while! Come and join us to get hands on with omics data integration
📍 22–24 Sept 2025, Lund University
🎟️ Rego closes 12 Sept (limited spots)
➡️ mixomics.org/2025/08/mixo...
#mixOmics #RStats #omics
📍 22–24 Sept 2025, Lund University
🎟️ Rego closes 12 Sept (limited spots)
➡️ mixomics.org/2025/08/mixo...
#mixOmics #RStats #omics
[open] 3-day mixOmics workshop, 22 – 24 Sept 2025, Lund University – mixOmics
mixomics.org
August 26, 2025 at 10:35 PM
🥁 We haven't run in-person mixOmics workshops for a while! Come and join us to get hands on with omics data integration
📍 22–24 Sept 2025, Lund University
🎟️ Rego closes 12 Sept (limited spots)
➡️ mixomics.org/2025/08/mixo...
#mixOmics #RStats #omics
📍 22–24 Sept 2025, Lund University
🎟️ Rego closes 12 Sept (limited spots)
➡️ mixomics.org/2025/08/mixo...
#mixOmics #RStats #omics
Reposted by Claudio Díaz-García
⚡️Thrilled that #VirtualLab is published in @nature.com! www.nature.com/articles/s41...
We created a team of AI agents to mirror my Stanford lab 🤖. Led by a PI agent, the AI scientists ran their own group meetings and discovered effective binders to new CoVID variants that we validated.
We created a team of AI agents to mirror my Stanford lab 🤖. Led by a PI agent, the AI scientists ran their own group meetings and discovered effective binders to new CoVID variants that we validated.
July 29, 2025 at 4:05 PM
⚡️Thrilled that #VirtualLab is published in @nature.com! www.nature.com/articles/s41...
We created a team of AI agents to mirror my Stanford lab 🤖. Led by a PI agent, the AI scientists ran their own group meetings and discovered effective binders to new CoVID variants that we validated.
We created a team of AI agents to mirror my Stanford lab 🤖. Led by a PI agent, the AI scientists ran their own group meetings and discovered effective binders to new CoVID variants that we validated.
Reposted by Claudio Díaz-García
The new version of MetaPhlAn v4.2.2 released!
📌taxonomic profiling of long-read metagenomes for the first time
📌new version of the MetaPhlAn db (vJan25_202503) containing >21k new SGBs
Try it out & @hutlab.bsky.social and we are looking forward to your feedback!
forum.biobakery.org/t/metaphlan-...
📌taxonomic profiling of long-read metagenomes for the first time
📌new version of the MetaPhlAn db (vJan25_202503) containing >21k new SGBs
Try it out & @hutlab.bsky.social and we are looking forward to your feedback!
forum.biobakery.org/t/metaphlan-...
MetaPhlAn 4.2.2 release (initial long-read sequencing support and database update)
Announcement We are pleased to share that MetaPhlAn 4.2.2 is now available, which incorporates taxonomic profiling of long-read metagenomes for the first time and includes a new version of the MetaPhl...
forum.biobakery.org
June 11, 2025 at 6:15 AM
The new version of MetaPhlAn v4.2.2 released!
📌taxonomic profiling of long-read metagenomes for the first time
📌new version of the MetaPhlAn db (vJan25_202503) containing >21k new SGBs
Try it out & @hutlab.bsky.social and we are looking forward to your feedback!
forum.biobakery.org/t/metaphlan-...
📌taxonomic profiling of long-read metagenomes for the first time
📌new version of the MetaPhlAn db (vJan25_202503) containing >21k new SGBs
Try it out & @hutlab.bsky.social and we are looking forward to your feedback!
forum.biobakery.org/t/metaphlan-...
Reposted by Claudio Díaz-García
If you have ever wondered what might happen to short chain fatty acids made by the microbiome. Here is a large class of metabolites and how they link to biology. www.cell.com/cell/fulltex...
The microbiome diversifies long- to short-chain fatty acid-derived N-acyl lipids
Mass spectrometry data mining tools enabled the creation of an MS/MS spectral library
containing hundreds of N-acyl lipids, including conjugates with short-chain fatty
acids. This resource enabled the...
www.cell.com
June 12, 2025 at 5:56 PM
If you have ever wondered what might happen to short chain fatty acids made by the microbiome. Here is a large class of metabolites and how they link to biology. www.cell.com/cell/fulltex...
Reposted by Claudio Díaz-García
OPEN CALL for PhD positions in our lab through the semm_it program:
1️⃣ Microbiome signatures of early on-set colorectal cancer
2️⃣ High-resolution computational metagenomics for the study of human microbiome transmission
More info: www.semm.it/education/op...
Apply by June 9!
1️⃣ Microbiome signatures of early on-set colorectal cancer
2️⃣ High-resolution computational metagenomics for the study of human microbiome transmission
More info: www.semm.it/education/op...
Apply by June 9!
Open Positions | SEMM European School of Molecular Medicine
www.semm.it
April 18, 2025 at 9:25 PM
OPEN CALL for PhD positions in our lab through the semm_it program:
1️⃣ Microbiome signatures of early on-set colorectal cancer
2️⃣ High-resolution computational metagenomics for the study of human microbiome transmission
More info: www.semm.it/education/op...
Apply by June 9!
1️⃣ Microbiome signatures of early on-set colorectal cancer
2️⃣ High-resolution computational metagenomics for the study of human microbiome transmission
More info: www.semm.it/education/op...
Apply by June 9!
Reposted by Claudio Díaz-García
El equipo de Salud Entre Culturas protagonizó ayer la sesión general en el salón de actos del Hospital Ramón y Cajal. Lo hizo explicando el Servicio de Interpretación y Mediación Intercultural como modelo de éxito
@saludentreculturas.bsky.social
www.saludentreculturas.es
@saludentreculturas.bsky.social
www.saludentreculturas.es
May 22, 2025 at 8:50 AM
El equipo de Salud Entre Culturas protagonizó ayer la sesión general en el salón de actos del Hospital Ramón y Cajal. Lo hizo explicando el Servicio de Interpretación y Mediación Intercultural como modelo de éxito
@saludentreculturas.bsky.social
www.saludentreculturas.es
@saludentreculturas.bsky.social
www.saludentreculturas.es
Reposted by Claudio Díaz-García
🧵No os perdáis las novedades presentadas en seimc2025.org
📍#SEIMC2025 arranca con fuerza 💪
Aquí un hilo con nuestras aportaciones 👇
📍#SEIMC2025 arranca con fuerza 💪
Aquí un hilo con nuestras aportaciones 👇
May 22, 2025 at 11:46 AM
🧵No os perdáis las novedades presentadas en seimc2025.org
📍#SEIMC2025 arranca con fuerza 💪
Aquí un hilo con nuestras aportaciones 👇
📍#SEIMC2025 arranca con fuerza 💪
Aquí un hilo con nuestras aportaciones 👇
Reposted by Claudio Díaz-García
Don't forget to come and chat to us about our poster on the diagnostic value of CT-guided biopsy for spondylodiscitis!
#ESCMIDGlobal #IDSky #MedID
@infecciosasryc.bsky.social
#ESCMIDGlobal #IDSky #MedID
@infecciosasryc.bsky.social
April 13, 2025 at 9:33 AM
Don't forget to come and chat to us about our poster on the diagnostic value of CT-guided biopsy for spondylodiscitis!
#ESCMIDGlobal #IDSky #MedID
@infecciosasryc.bsky.social
#ESCMIDGlobal #IDSky #MedID
@infecciosasryc.bsky.social
Reposted by Claudio Díaz-García
🧵 Nuevo hilo de ciencia sobre VIH, ofrecido ofrecido por Elena Moreno del Olmo, del Instituto Ramón y Cajal de Investigación Sanitaria (IRYCIS): Differential systemic immune-inflammation index levels in people with and without HIV infection ➡️ journals.lww.com/aidsonline/a...
March 19, 2025 at 8:20 PM
🧵 Nuevo hilo de ciencia sobre VIH, ofrecido ofrecido por Elena Moreno del Olmo, del Instituto Ramón y Cajal de Investigación Sanitaria (IRYCIS): Differential systemic immune-inflammation index levels in people with and without HIV infection ➡️ journals.lww.com/aidsonline/a...
Reposted by Claudio Díaz-García
🥁 NEW
@vheidrich.bsky.social @mireiavallesc.bsky.social and Nicola Segata described the state-of-the-art of human microbiome transmission, including approaches and challenges associated with microbiome transmission analysis!
@vheidrich.bsky.social @mireiavallesc.bsky.social and Nicola Segata described the state-of-the-art of human microbiome transmission, including approaches and challenges associated with microbiome transmission analysis!
Thrilled to share our review (with @mireiavallesc.bsky.social and Nicola Segata) on "Human microbiome acquisition and transmission" just published @naturerevmicro.bsky.social
March 21, 2025 at 6:00 PM
🥁 NEW
@vheidrich.bsky.social @mireiavallesc.bsky.social and Nicola Segata described the state-of-the-art of human microbiome transmission, including approaches and challenges associated with microbiome transmission analysis!
@vheidrich.bsky.social @mireiavallesc.bsky.social and Nicola Segata described the state-of-the-art of human microbiome transmission, including approaches and challenges associated with microbiome transmission analysis!
Reposted by Claudio Díaz-García
🧵 ¡Nuevo hilo de ciencia sobre #VIH! Ofrecido por Elena Moreno del Olmo, del Instituto Ramón y Cajal de Investigación Sanitaria: Fecal microbiota transplantation alters the proteomic landscape of inflammation in HIV: identifying bacterial drivers ➡️ microbiomejournal.biomedcentral.com/articles/10....
March 4, 2025 at 8:06 PM
🧵 ¡Nuevo hilo de ciencia sobre #VIH! Ofrecido por Elena Moreno del Olmo, del Instituto Ramón y Cajal de Investigación Sanitaria: Fecal microbiota transplantation alters the proteomic landscape of inflammation in HIV: identifying bacterial drivers ➡️ microbiomejournal.biomedcentral.com/articles/10....
Reposted by Claudio Díaz-García
🧵 Llega un nuevo hilo de ciencia sobre VIH, ofrecido por Elena Moreno del Olmo, del Instituto Ramón y Cajal de Investigación Sanitaria (IRYCIS): 'Dynamics of the blood plasma proteome during hyperacute HIV-1 infection' ➡️ www.nature.com/articles/s41...
March 11, 2025 at 10:15 PM
🧵 Llega un nuevo hilo de ciencia sobre VIH, ofrecido por Elena Moreno del Olmo, del Instituto Ramón y Cajal de Investigación Sanitaria (IRYCIS): 'Dynamics of the blood plasma proteome during hyperacute HIV-1 infection' ➡️ www.nature.com/articles/s41...
Reposted by Claudio Díaz-García
🧵 Llega nuevo hilo de ciencia, ofrecido por Elena Moreno del Olmo, del Instituto Ramón y Cajal de Investigación Sanitaria (IRYCIS): Cervical dysplasia in women with HIV in the modern treat-all era: Elevated risk remains despite long-term ART and normal CD4 count ➡️ journals.lww.com/aidsonline/a...
March 14, 2025 at 2:33 PM
🧵 Llega nuevo hilo de ciencia, ofrecido por Elena Moreno del Olmo, del Instituto Ramón y Cajal de Investigación Sanitaria (IRYCIS): Cervical dysplasia in women with HIV in the modern treat-all era: Elevated risk remains despite long-term ART and normal CD4 count ➡️ journals.lww.com/aidsonline/a...
Reposted by Claudio Díaz-García
Jawdropping.
You would expect this in a dictatorship, not the United States.
This country is unrecognizable.
You would expect this in a dictatorship, not the United States.
This country is unrecognizable.
March 20, 2025 at 2:11 AM
Jawdropping.
You would expect this in a dictatorship, not the United States.
This country is unrecognizable.
You would expect this in a dictatorship, not the United States.
This country is unrecognizable.
Reposted by Claudio Díaz-García
The projected cuts to PEPFAR and USAID will result in thousands of aviodable deaths world-wide. The US has led the world in helping the vulnerable under both Republican and Democratic leadership. Please write your elected leaders to support PEPFAR and USAID. 5CALLS.org makes it easy.
March 15, 2025 at 6:27 PM
The projected cuts to PEPFAR and USAID will result in thousands of aviodable deaths world-wide. The US has led the world in helping the vulnerable under both Republican and Democratic leadership. Please write your elected leaders to support PEPFAR and USAID. 5CALLS.org makes it easy.
Reposted by Claudio Díaz-García
I just wrote a piece on why I think the chatter about AI putting programmers out of work is wrong. Every time it gets easier to tell computers what we want them to do, it brings more people into the fold and unleashes a wave of creativity and creative destruction. That reads like opportunity to me.
The End of Programming as We Know It
www.oreilly.com
February 5, 2025 at 2:05 PM
I just wrote a piece on why I think the chatter about AI putting programmers out of work is wrong. Every time it gets easier to tell computers what we want them to do, it brings more people into the fold and unleashes a wave of creativity and creative destruction. That reads like opportunity to me.
Reposted by Claudio Díaz-García
Fecal microbiota transplantation alters the proteomic landscape of inflammation in HIV: identifying bacterial drivers
By @cladigar.bsky.social
Full paper here: microbiomejournal.biomedcentral.com/articles/10....
3/3
By @cladigar.bsky.social
Full paper here: microbiomejournal.biomedcentral.com/articles/10....
3/3
Fecal microbiota transplantation alters the proteomic landscape of inflammation in HIV: identifying bacterial drivers - Microbiome
Background Despite effective antiretroviral therapy, people with HIV (PWH) experience persistent systemic inflammation and increased morbidity and mortality. Modulating the gut microbiome through feca...
microbiomejournal.biomedcentral.com
January 21, 2025 at 3:39 PM
Fecal microbiota transplantation alters the proteomic landscape of inflammation in HIV: identifying bacterial drivers
By @cladigar.bsky.social
Full paper here: microbiomejournal.biomedcentral.com/articles/10....
3/3
By @cladigar.bsky.social
Full paper here: microbiomejournal.biomedcentral.com/articles/10....
3/3
Reposted by Claudio Díaz-García
Thanks @cladigar.bsky.social for a great talk and sharing your findings!
January 21, 2025 at 3:55 PM
Thanks @cladigar.bsky.social for a great talk and sharing your findings!
Reposted by Claudio Díaz-García
TODAY: We are looking forward to discussing with you the latest #microbiome findings!
Jon us here cassyni.com/s/mvif-35
Jon us here cassyni.com/s/mvif-35
January 21, 2025 at 9:53 AM
TODAY: We are looking forward to discussing with you the latest #microbiome findings!
Jon us here cassyni.com/s/mvif-35
Jon us here cassyni.com/s/mvif-35
Reposted by Claudio Díaz-García
This week I received a very nice cold email (sharing it w/😀's permission)
😀asked:
What does your daily work involve?
What skills do you think are most important ... to pursue this path?
What do you enjoy most about your work as a microbiome scientist?
What would you answer?
😀asked:
What does your daily work involve?
What skills do you think are most important ... to pursue this path?
What do you enjoy most about your work as a microbiome scientist?
What would you answer?
December 12, 2024 at 3:23 PM
This week I received a very nice cold email (sharing it w/😀's permission)
😀asked:
What does your daily work involve?
What skills do you think are most important ... to pursue this path?
What do you enjoy most about your work as a microbiome scientist?
What would you answer?
😀asked:
What does your daily work involve?
What skills do you think are most important ... to pursue this path?
What do you enjoy most about your work as a microbiome scientist?
What would you answer?
Reposted by Claudio Díaz-García
We've completed a 3-year field study on scientific poster design. But poster science doesn't really fit into an established journal.
This is why I started my own journal with @Curvenote.com. Niche research, published for impact, with public peer review.
This is why I started my own journal with @Curvenote.com. Niche research, published for impact, with public peer review.
December 16, 2024 at 4:00 AM
We've completed a 3-year field study on scientific poster design. But poster science doesn't really fit into an established journal.
This is why I started my own journal with @Curvenote.com. Niche research, published for impact, with public peer review.
This is why I started my own journal with @Curvenote.com. Niche research, published for impact, with public peer review.
Reposted by Claudio Díaz-García
Freshly landed here, my first sci-bluesky-tutorial!
We just published this study in #Microbiome
📢The microbiome is a potential therapeutic target to mitigate inflammation-related complications in people with #HIV
📜Article doi.org/10.1186/s401...
📺Video abstract youtube.com/watch?v=RxZe...
We just published this study in #Microbiome
📢The microbiome is a potential therapeutic target to mitigate inflammation-related complications in people with #HIV
📜Article doi.org/10.1186/s401...
📺Video abstract youtube.com/watch?v=RxZe...
December 4, 2024 at 5:14 PM
Freshly landed here, my first sci-bluesky-tutorial!
We just published this study in #Microbiome
📢The microbiome is a potential therapeutic target to mitigate inflammation-related complications in people with #HIV
📜Article doi.org/10.1186/s401...
📺Video abstract youtube.com/watch?v=RxZe...
We just published this study in #Microbiome
📢The microbiome is a potential therapeutic target to mitigate inflammation-related complications in people with #HIV
📜Article doi.org/10.1186/s401...
📺Video abstract youtube.com/watch?v=RxZe...
Reposted by Claudio Díaz-García
🥁 New Publication Alert:
Our manuscript on the ☕️ and #microbiome relationship is out in #NatureMicrobiology:
www.nature.com/articles/s41...
1/12
Our manuscript on the ☕️ and #microbiome relationship is out in #NatureMicrobiology:
www.nature.com/articles/s41...
1/12
Coffee consumption is associated with intestinal Lawsonibacter asaccharolyticus abundance and prevalence across multiple cohorts - Nature Microbiology
Coffee consumption is associated with the presence and abundance of a specific member of the human gut microbiome, Lawsonibacter asaccharolyticus, and changes to the plasma metabolome.
www.nature.com
November 18, 2024 at 11:24 AM
🥁 New Publication Alert:
Our manuscript on the ☕️ and #microbiome relationship is out in #NatureMicrobiology:
www.nature.com/articles/s41...
1/12
Our manuscript on the ☕️ and #microbiome relationship is out in #NatureMicrobiology:
www.nature.com/articles/s41...
1/12
Reposted by Claudio Díaz-García
Habría que reformular por completo cómo enseñamos estadística. Lo ideal sería empezar por enseñar lo que son las regresiones, y a partir de allí enseñar el resto de técnicas o pruebas estadísticas y explicar cómo todas son simples modelos de regresión.
November 19, 2024 at 11:44 AM
Habría que reformular por completo cómo enseñamos estadística. Lo ideal sería empezar por enseñar lo que son las regresiones, y a partir de allí enseñar el resto de técnicas o pruebas estadísticas y explicar cómo todas son simples modelos de regresión.
Reposted by Claudio Díaz-García
That's a wrap for #MVIF #33 in Atlantic zone
THANK YOU to #microbiome people who tuned in & all the amazing speakers!
📢 you can submit your work for January and February 2025
www.microbiome-vif.org/en-US/-/info...
1/2
THANK YOU to #microbiome people who tuned in & all the amazing speakers!
📢 you can submit your work for January and February 2025
www.microbiome-vif.org/en-US/-/info...
1/2
How to submit an abstract
www.microbiome-vif.org
November 12, 2024 at 4:06 PM
That's a wrap for #MVIF #33 in Atlantic zone
THANK YOU to #microbiome people who tuned in & all the amazing speakers!
📢 you can submit your work for January and February 2025
www.microbiome-vif.org/en-US/-/info...
1/2
THANK YOU to #microbiome people who tuned in & all the amazing speakers!
📢 you can submit your work for January and February 2025
www.microbiome-vif.org/en-US/-/info...
1/2