Australian BioImage Analysts' Society
@ausbias.org
A professional and social society for all bioimage analysts in Australia. A subcommittee of Light Microscopy Australia (LMA), which is a special interest group of Australian Microscopy and Microanalysis Society (AMMS)
https://ausbias.org/
https://ausbias.org/
Day two of @globias.bsky.social symposium ended with a "call for help" session. It takes courage to speak at a conference telling your peers about what you know, it takes even more to ask for help with what you don't know. Great job from the presenters and great suggestions by the audience.
October 30, 2025 at 12:50 PM
Day two of @globias.bsky.social symposium ended with a "call for help" session. It takes courage to speak at a conference telling your peers about what you know, it takes even more to ask for help with what you don't know. Great job from the presenters and great suggestions by the audience.
Reposted by Australian BioImage Analysts' Society
Longer wrap-up to come, but in the meantime: we had a fantastic and productive time at the napari hackathon at @globias.bsky.social 2025 conference! Thanks to all the participants and to the GloBIAS team for hosting us!
October 30, 2025 at 6:53 AM
Longer wrap-up to come, but in the meantime: we had a fantastic and productive time at the napari hackathon at @globias.bsky.social 2025 conference! Thanks to all the participants and to the GloBIAS team for hosting us!
Reposted by Australian BioImage Analysts' Society
#GloBIAS2025 is ongoing with amazing speaker lineups at Kobe city
Beautiful location, amazing food and warm bioimage analysis community. What wlse does one need? 😊
Thanks to @globias.bsky.social for this event
Beautiful location, amazing food and warm bioimage analysis community. What wlse does one need? 😊
Thanks to @globias.bsky.social for this event
October 30, 2025 at 2:12 AM
#GloBIAS2025 is ongoing with amazing speaker lineups at Kobe city
Beautiful location, amazing food and warm bioimage analysis community. What wlse does one need? 😊
Thanks to @globias.bsky.social for this event
Beautiful location, amazing food and warm bioimage analysis community. What wlse does one need? 😊
Thanks to @globias.bsky.social for this event
Day one of @globias.bsky.social symposium. Analysis and sake is a surprisingly good pairing.
October 29, 2025 at 12:42 PM
Day one of @globias.bsky.social symposium. Analysis and sake is a surprisingly good pairing.
New blog post! Before heading off to @globias.bsky.social we'd love to hear about how image analysis is performed and accessed by the microscopy community! Find info and link here: ausbias.org/blog/2025/10...
Launching the inaugural AusBIAS Survey
How Do You Approach Image Analysis? AusBIAS Wants to Hear From You By Lachlan Whitehead.
ausbias.org
October 7, 2025 at 11:58 PM
New blog post! Before heading off to @globias.bsky.social we'd love to hear about how image analysis is performed and accessed by the microscopy community! Find info and link here: ausbias.org/blog/2025/10...
Reposted by Australian BioImage Analysts' Society
Halfway to I2K is BACK, friends of all kinds! Last year, 650 people attended 30+ TOTALLY FREE image analysis workshops of all kinds, across many timezones.
If you make image analysis software and want to teach it, workshop submissions are open now! We'd love to have your tool highlighted.
If you make image analysis software and want to teach it, workshop submissions are open now! We'd love to have your tool highlighted.
#HappyFluorescenceFriday!
#microscopycommunity- want to learn open source image analysis or share your knowledge to help others? We’ve got a FREE virtual workshop Nov 17-19! Now accepting workshop session applications!
Learn more & sign up: buff.ly/esGIotD
#microscopycommunity- want to learn open source image analysis or share your knowledge to help others? We’ve got a FREE virtual workshop Nov 17-19! Now accepting workshop session applications!
Learn more & sign up: buff.ly/esGIotD
September 23, 2025 at 3:48 PM
Halfway to I2K is BACK, friends of all kinds! Last year, 650 people attended 30+ TOTALLY FREE image analysis workshops of all kinds, across many timezones.
If you make image analysis software and want to teach it, workshop submissions are open now! We'd love to have your tool highlighted.
If you make image analysis software and want to teach it, workshop submissions are open now! We'd love to have your tool highlighted.
One of the great things about HPC is the ability to fail at so many more things at once.
September 12, 2025 at 4:22 AM
One of the great things about HPC is the ability to fail at so many more things at once.
Trying to fill out the calendar for AusBIAS monthly online meetings. 3 or 4 spots left that will go to members first if requested, but if you're an internationally based image analyst and would like an invite - let me know! Just be aware of time zones, +10GMT isn't great for everyone!
July 2, 2025 at 12:50 AM
Trying to fill out the calendar for AusBIAS monthly online meetings. 3 or 4 spots left that will go to members first if requested, but if you're an internationally based image analyst and would like an invite - let me know! Just be aware of time zones, +10GMT isn't great for everyone!
Saving this video to show to anyone who asks "What is it you do?"
And just like that @katharinaweins.bsky.social and Elvira Isenring managed to make us look cooler than we'll ever be:
www.youtube.com/watch?v=8t8R...
www.youtube.com/watch?v=8t8R...
Bioimaging | UZH Research Spotlight
YouTube video by Universität Zürich
www.youtube.com
June 24, 2025 at 11:05 PM
Saving this video to show to anyone who asks "What is it you do?"
Reposted by Australian BioImage Analysts' Society
Lots of food for thought washed down with a cold pint after todays train the trainers 2025 CRICK Partnership & DAIM workshop #trainthetrainerBIA2025 @crick.ac.uk @ucl.ac.uk @imperialcollegeldn.bsky.social @martinjones.bsky.social @lankylaste.bsky.social @giuliapaci.bsky.social @dgaboriau.bsky.social
June 13, 2025 at 7:54 PM
Lots of food for thought washed down with a cold pint after todays train the trainers 2025 CRICK Partnership & DAIM workshop #trainthetrainerBIA2025 @crick.ac.uk @ucl.ac.uk @imperialcollegeldn.bsky.social @martinjones.bsky.social @lankylaste.bsky.social @giuliapaci.bsky.social @dgaboriau.bsky.social
Reposted by Australian BioImage Analysts' Society
Ok guys **nobody open any more issues** 😂
May 28, 2025 at 3:57 AM
Ok guys **nobody open any more issues** 😂
Reposted by Australian BioImage Analysts' Society
We are proudly hosting
𝐃𝐫. 𝐓𝐚𝐥𝐥𝐞𝐲 𝐋𝐚𝐦𝐛𝐞𝐫𝐭 @talley.codes (CITE, Harvard Medical School):
𝐒𝐢𝐦𝐮𝐥𝐚𝐭𝐢𝐧𝐠 𝐫𝐞𝐚𝐥𝐢𝐬𝐭𝐢𝐜 𝐥𝐢𝐠𝐡𝐭 𝐦𝐢𝐜𝐫𝐨𝐬𝐜𝐨𝐩𝐲 𝐢𝐦𝐚𝐠𝐞𝐬 𝐮𝐬𝐢𝐧𝐠 𝐦𝐢𝐜𝐫𝐨𝐬𝐢𝐦
When: 𝐌𝐚𝐲 𝟐𝟗𝐭𝐡 @ 𝟏𝟏 𝐚𝐦 𝐄𝐃𝐓 (Boston time)
Join us on Zoom! harvard.zoom.us/j/9762343464...
𝐃𝐫. 𝐓𝐚𝐥𝐥𝐞𝐲 𝐋𝐚𝐦𝐛𝐞𝐫𝐭 @talley.codes (CITE, Harvard Medical School):
𝐒𝐢𝐦𝐮𝐥𝐚𝐭𝐢𝐧𝐠 𝐫𝐞𝐚𝐥𝐢𝐬𝐭𝐢𝐜 𝐥𝐢𝐠𝐡𝐭 𝐦𝐢𝐜𝐫𝐨𝐬𝐜𝐨𝐩𝐲 𝐢𝐦𝐚𝐠𝐞𝐬 𝐮𝐬𝐢𝐧𝐠 𝐦𝐢𝐜𝐫𝐨𝐬𝐢𝐦
When: 𝐌𝐚𝐲 𝟐𝟗𝐭𝐡 @ 𝟏𝟏 𝐚𝐦 𝐄𝐃𝐓 (Boston time)
Join us on Zoom! harvard.zoom.us/j/9762343464...
May 7, 2025 at 3:59 PM
We are proudly hosting
𝐃𝐫. 𝐓𝐚𝐥𝐥𝐞𝐲 𝐋𝐚𝐦𝐛𝐞𝐫𝐭 @talley.codes (CITE, Harvard Medical School):
𝐒𝐢𝐦𝐮𝐥𝐚𝐭𝐢𝐧𝐠 𝐫𝐞𝐚𝐥𝐢𝐬𝐭𝐢𝐜 𝐥𝐢𝐠𝐡𝐭 𝐦𝐢𝐜𝐫𝐨𝐬𝐜𝐨𝐩𝐲 𝐢𝐦𝐚𝐠𝐞𝐬 𝐮𝐬𝐢𝐧𝐠 𝐦𝐢𝐜𝐫𝐨𝐬𝐢𝐦
When: 𝐌𝐚𝐲 𝟐𝟗𝐭𝐡 @ 𝟏𝟏 𝐚𝐦 𝐄𝐃𝐓 (Boston time)
Join us on Zoom! harvard.zoom.us/j/9762343464...
𝐃𝐫. 𝐓𝐚𝐥𝐥𝐞𝐲 𝐋𝐚𝐦𝐛𝐞𝐫𝐭 @talley.codes (CITE, Harvard Medical School):
𝐒𝐢𝐦𝐮𝐥𝐚𝐭𝐢𝐧𝐠 𝐫𝐞𝐚𝐥𝐢𝐬𝐭𝐢𝐜 𝐥𝐢𝐠𝐡𝐭 𝐦𝐢𝐜𝐫𝐨𝐬𝐜𝐨𝐩𝐲 𝐢𝐦𝐚𝐠𝐞𝐬 𝐮𝐬𝐢𝐧𝐠 𝐦𝐢𝐜𝐫𝐨𝐬𝐢𝐦
When: 𝐌𝐚𝐲 𝟐𝟗𝐭𝐡 @ 𝟏𝟏 𝐚𝐦 𝐄𝐃𝐓 (Boston time)
Join us on Zoom! harvard.zoom.us/j/9762343464...
Reposted by Australian BioImage Analysts' Society
#GloBIAS has a blog series - new post out today!
Two GloBIAS volunteers reflect on the first version of GloBIAS Free Help (previously Call4Help), explain the idea behind this activity and what was learned during the pilot session.
Please check out the webpage: www.globias.org/resources/gl...
Two GloBIAS volunteers reflect on the first version of GloBIAS Free Help (previously Call4Help), explain the idea behind this activity and what was learned during the pilot session.
Please check out the webpage: www.globias.org/resources/gl...
May 1, 2025 at 1:12 PM
#GloBIAS has a blog series - new post out today!
Two GloBIAS volunteers reflect on the first version of GloBIAS Free Help (previously Call4Help), explain the idea behind this activity and what was learned during the pilot session.
Please check out the webpage: www.globias.org/resources/gl...
Two GloBIAS volunteers reflect on the first version of GloBIAS Free Help (previously Call4Help), explain the idea behind this activity and what was learned during the pilot session.
Please check out the webpage: www.globias.org/resources/gl...
New Post Alert! In our first meeting of 2025 @pammer61.bsky.social presented the wonderful perspective article of @bethcimini.bsky.social etal: "The crucial role of bioimage analysts in scientific research and publication" - Preaching to the choir, but with good cause!
Check it out at ausbias.org.
Check it out at ausbias.org.
Home
The Australian Bioimage Analysts’ Society is dedicated to supporting and connecting bioimage analysts across Australia.
ausbias.org
April 17, 2025 at 6:01 AM
New Post Alert! In our first meeting of 2025 @pammer61.bsky.social presented the wonderful perspective article of @bethcimini.bsky.social etal: "The crucial role of bioimage analysts in scientific research and publication" - Preaching to the choir, but with good cause!
Check it out at ausbias.org.
Check it out at ausbias.org.
Reposted by Australian BioImage Analysts' Society
GloBIAS #BioimageAnalysis #Conference 2025 – we have opened the registration for our 2025 in-person event. Please check the webpage www.globias.org/activities/b... for more information and the link to the registration form.
April 16, 2025 at 7:40 PM
GloBIAS #BioimageAnalysis #Conference 2025 – we have opened the registration for our 2025 in-person event. Please check the webpage www.globias.org/activities/b... for more information and the link to the registration form.
Always a great meeting!
Save the Date! There are now only 298 days until the next Light Microscopy Australia symposium. This will be hosted at the University of Sydney from 3-5th Feb 2026. Follow this page and make sure that you renew your @australianmms.bsky.social membership to be kept up to date with symposium details!
April 12, 2025 at 9:01 AM
Always a great meeting!
Reposted by Australian BioImage Analysts' Society
🚨Alô #bsky and #microscopy community, we got #ReScale4DL, our new work in
@aiopticalbiolab.bsky.social
, out today!😍 🥳
We present the #imageresolutionparadox phenomenon for #DL-results 🤓
👇Check it out!!
@aiopticalbiolab.bsky.social
, out today!😍 🥳
We present the #imageresolutionparadox phenomenon for #DL-results 🤓
👇Check it out!!
Why do lower-resolution images sometimes yield better results in deep learning for bioimaging analyses? 🤔📉
Mariana Ferreira's new preprint on #ReScale4DL explores this paradox and introduces optimal resolution design! @gomez-mariscal.bsky.social brainchild🧑🔬✨
Check: www.biorxiv.org/content/10.1...
Mariana Ferreira's new preprint on #ReScale4DL explores this paradox and introduces optimal resolution design! @gomez-mariscal.bsky.social brainchild🧑🔬✨
Check: www.biorxiv.org/content/10.1...
April 10, 2025 at 4:53 PM
🚨Alô #bsky and #microscopy community, we got #ReScale4DL, our new work in
@aiopticalbiolab.bsky.social
, out today!😍 🥳
We present the #imageresolutionparadox phenomenon for #DL-results 🤓
👇Check it out!!
@aiopticalbiolab.bsky.social
, out today!😍 🥳
We present the #imageresolutionparadox phenomenon for #DL-results 🤓
👇Check it out!!
Reposted by Australian BioImage Analysts' Society
If you train people in ImageJ, Fiji, whatever, even if it isn't your day job, please let us know, and please share this post! Thanks a ton, we really appreciate it. (2/2) forms.gle/C8dUpg8qZkbD... #bioimaging #microscopy #bioimageanalysis
Open Source Bioimage Analysis Training Survey
We are attempting for a publication to estimate the number of biologists who have attended a tutorial or training course in open source bioimage analysis (especially user friendly tools, but anything ...
forms.gle
April 8, 2025 at 2:32 PM
If you train people in ImageJ, Fiji, whatever, even if it isn't your day job, please let us know, and please share this post! Thanks a ton, we really appreciate it. (2/2) forms.gle/C8dUpg8qZkbD... #bioimaging #microscopy #bioimageanalysis
Got a bit carried away and registered a domain for our society. Turns out I can then use that domain as a bsky handle.
April 9, 2025 at 8:46 AM
Got a bit carried away and registered a domain for our society. Turns out I can then use that domain as a bsky handle.
Reposted by Australian BioImage Analysts' Society
🙌 Happening now! Join us for the #EuroBioImaging Image Data Community Days. Featuring workshops, talks, and interactive discussions, this online event is for anyone interested in image data & it's FREE and open to all. Starting now!
#ImagingCommunity
Register🔽
www.eurobioimaging.eu/our-events/i...
#ImagingCommunity
Register🔽
www.eurobioimaging.eu/our-events/i...
April 7, 2025 at 7:08 AM
🙌 Happening now! Join us for the #EuroBioImaging Image Data Community Days. Featuring workshops, talks, and interactive discussions, this online event is for anyone interested in image data & it's FREE and open to all. Starting now!
#ImagingCommunity
Register🔽
www.eurobioimaging.eu/our-events/i...
#ImagingCommunity
Register🔽
www.eurobioimaging.eu/our-events/i...
Reposted by Australian BioImage Analysts' Society
Preprint (update) alert!
F-BIAS: Towards a distributed national core facility for Bioimage Analysis. (arxiv.org/abs/2409.15009)
0/ In this paper we discuss our experience in federating ourselves and delivering bioimage analysis services to the scientific community in France.
👇 a short thread
F-BIAS: Towards a distributed national core facility for Bioimage Analysis. (arxiv.org/abs/2409.15009)
0/ In this paper we discuss our experience in federating ourselves and delivering bioimage analysis services to the scientific community in France.
👇 a short thread
F-BIAS: Towards a distributed national core facility for Bioimage Analysis.
arxiv.org
March 31, 2025 at 7:39 AM
Preprint (update) alert!
F-BIAS: Towards a distributed national core facility for Bioimage Analysis. (arxiv.org/abs/2409.15009)
0/ In this paper we discuss our experience in federating ourselves and delivering bioimage analysis services to the scientific community in France.
👇 a short thread
F-BIAS: Towards a distributed national core facility for Bioimage Analysis. (arxiv.org/abs/2409.15009)
0/ In this paper we discuss our experience in federating ourselves and delivering bioimage analysis services to the scientific community in France.
👇 a short thread
All I wanted to do was add the bsky logo to the footer of our new website. Down the rabbit hole I went and now have a fully custom Jekyll site with manual theme control and custom GitHub Actions deployment.
If you want to read the story of our logo, check it out:
ausbias.github.io/blog/2025/03...
If you want to read the story of our logo, check it out:
ausbias.github.io/blog/2025/03...
Home
The Australian Bioimage Analysts’ Society is dedicated to supporting and connecting bioimage analysts across Australia.
ausbias.github.io
March 28, 2025 at 9:41 AM
All I wanted to do was add the bsky logo to the footer of our new website. Down the rabbit hole I went and now have a fully custom Jekyll site with manual theme control and custom GitHub Actions deployment.
If you want to read the story of our logo, check it out:
ausbias.github.io/blog/2025/03...
If you want to read the story of our logo, check it out:
ausbias.github.io/blog/2025/03...
Reposted by Australian BioImage Analysts' Society
The #gitbob paper has been published in @natcomputsci.bsky.social.🥳
Learn about the path "Towards transparency and knowledge exchange in AI-assisted data analysis code generation" facilitating how humans and AI can work together to solve #dataanalysis tasks. 💽🧑🎓🖥️🏗️
rdcu.be/efkna
Learn about the path "Towards transparency and knowledge exchange in AI-assisted data analysis code generation" facilitating how humans and AI can work together to solve #dataanalysis tasks. 💽🧑🎓🖥️🏗️
rdcu.be/efkna
📢Out now! @haesleinhuepf.bsky.social presents an AI assistant integrated with GitHub/GitLab to facilitate iterative collaboration and transparency in data analysis and code generation. www.nature.com/articles/s43...
🔓https://rdcu.be/eflhX
🔓https://rdcu.be/eflhX
Towards transparency and knowledge exchange in AI-assisted data analysis code generation - Nature Computational Science
Nature Computational Science - Towards transparency and knowledge exchange in AI-assisted data analysis code generation
www.nature.com
March 27, 2025 at 1:01 PM
The #gitbob paper has been published in @natcomputsci.bsky.social.🥳
Learn about the path "Towards transparency and knowledge exchange in AI-assisted data analysis code generation" facilitating how humans and AI can work together to solve #dataanalysis tasks. 💽🧑🎓🖥️🏗️
rdcu.be/efkna
Learn about the path "Towards transparency and knowledge exchange in AI-assisted data analysis code generation" facilitating how humans and AI can work together to solve #dataanalysis tasks. 💽🧑🎓🖥️🏗️
rdcu.be/efkna
Reposted by Australian BioImage Analysts' Society
Only five days remain to register!*
Here is the tentative program:
*: it is likely that there won't be a deadline extension.
Here is the tentative program:
*: it is likely that there won't be a deadline extension.
March 27, 2025 at 11:19 AM
Only five days remain to register!*
Here is the tentative program:
*: it is likely that there won't be a deadline extension.
Here is the tentative program:
*: it is likely that there won't be a deadline extension.
Reposted by Australian BioImage Analysts' Society
Great opportunity to explore @ai4life.bsky.social's FAIR, open, community-driven repository of pre-trained AI models for image analysis, along with lessons learnt.
@ausbias.bsky.social @australianmms.bsky.social @nifaustralia.bsky.social
@ausbias.bsky.social @australianmms.bsky.social @nifaustralia.bsky.social
🚨 Save the Date! 🚨
AI4Life & @globias.bsky.social are hosting a 4-part webinar series to showcase AI4Life services and lessons learned.
📅 When: Feb 13, Apr 10, Jun 12, Aug 14
🖥️ How: Online | 🎥 Recorded
🔗 Registration: bit.ly/registration...
AI4Life & @globias.bsky.social are hosting a 4-part webinar series to showcase AI4Life services and lessons learned.
📅 When: Feb 13, Apr 10, Jun 12, Aug 14
🖥️ How: Online | 🎥 Recorded
🔗 Registration: bit.ly/registration...
March 26, 2025 at 11:52 PM
Great opportunity to explore @ai4life.bsky.social's FAIR, open, community-driven repository of pre-trained AI models for image analysis, along with lessons learnt.
@ausbias.bsky.social @australianmms.bsky.social @nifaustralia.bsky.social
@ausbias.bsky.social @australianmms.bsky.social @nifaustralia.bsky.social