Ahmed Hassan
ahmedhas.bsky.social
Ahmed Hassan
@ahmedhas.bsky.social
Just a guy doing single cell and some other stuff | Innate-like T cells | Hannover medical school | Immunologist.
Reposted by Ahmed Hassan
Preprint and the website by @dingdingpeng.the100.ci and @vincentab.bsky.social are great, and I got inspired to illustrate Bayesian workflow for model checking and comparison *before* model interpretation following their friendship importance example users.aalto.fi/~ave/casestu...
August 27, 2025 at 10:11 AM
🎉 Exciting news! Our paper has finally been published in Nature Communications!

If you’re interested in innate-like T cells, you’ll find this especially exciting.

www.nature.com/articles/s41...

#immunology #bioinformatics #innate_like_T_cells #iNKT #MAIT
Developmental features and unique characteristics of peptide-specific PLZF+ innate-like T cells in mice - Nature Communications
Development of T cells in the thymus results in small populations of innate like T cells. Here the authors characterise a population of innate-like T cells in mice engineered to enable MHC class I exp...
www.nature.com
June 6, 2025 at 3:33 PM
Reposted by Ahmed Hassan
I have a brilliant scientist in my group. She proposed we approach our science as a once in a lifetime opportunity. So, let's do the risky experiments, think deeply, write beautifully, and show reverence to the most awe-some career

@inikon.bsky.social
opportunity.do
March 1, 2025 at 4:12 AM
Reposted by Ahmed Hassan
Hello, Bluesky! ☀️

We fund frontier research in Europe—bold ideas, unexpected discoveries and science that shapes the future. So it’s only fitting we’ve landed here. Sorry for being late.

Follow us for updates on ERC funding, research policy, and our grantees' discoveries.
February 7, 2025 at 8:16 AM
Reposted by Ahmed Hassan
The T cell receptor sequence influences the likelihood of T cell memory formation

www.cell.com/cell-reports...
The T cell receptor sequence influences the likelihood of T cell memory formation
The human immune system contains a vast repertoire of somatically recombined T cell receptor (TCR) sequences. To connect TCR sequence to T cell function, Lagattuta et al. analyze the paired αβTCR and ...
www.cell.com
January 30, 2025 at 9:57 PM
Reposted by Ahmed Hassan
More on #OpenAI and #DeepSeek
January 31, 2025 at 9:28 AM
Reposted by Ahmed Hassan
This Deepseek thing is like when Godzilla show up to defeat a more evil kaiju
January 27, 2025 at 2:11 PM
This has been my opinion regarding the use of GPT and likes for writing.
No, I don't need a bloody copilot for this document, thank you.

Writing is, in no small part, a tool for thinking. If you outsource that element to a machine that cannot think, you shouldn't be surprised if, at the end of the process, neither you nor your reader are any the wiser.
January 26, 2025 at 8:53 PM
Reposted by Ahmed Hassan
yes.
January 26, 2025 at 4:49 AM
Reposted by Ahmed Hassan
Leave Greenland, Denmark, and Panama the fuck alone.
December 25, 2024 at 1:34 AM
#Immunosky CD4+ T-cells create a stable mechanical environment for force-sensitive TCR:pMHC interactions www.biorxiv.org/content/10.1...
CD4+ T-cells create a stable mechanical environment for force-sensitive TCR:pMHC interactions
Mechanical forces acting on ligand-engaged T-cell receptors (TCRs) have previously been implicated in T-cell antigen recognition and ligand discrimination, yet their magnitude, frequency, and impact r...
www.biorxiv.org
December 23, 2024 at 12:57 AM
Reposted by Ahmed Hassan
EXTRA-seq: a genome-integrated extended massively parallel reporter assay to quantify enhancer-promoter communication

www.biorxiv.org/content/10.1...
EXTRA-seq: a genome-integrated extended massively parallel reporter assay to quantify enhancer-promoter communication
Precise control of gene expression is essential for cellular function, but the mechanisms by which enhancers communicate with promoters to coordinate this process are not fully understood. While seque...
www.biorxiv.org
December 16, 2024 at 6:11 PM
Support IMGT Nomenclature for Standardized Naming of Immunoglobulins and T-Cell Receptors
Avez-vous une minute pour aider cette campagne?
Support IMGT Nomenclature for Standardized Naming of Immunoglobulins and T-Cell Receptors
chng.it
December 16, 2024 at 5:04 PM
Reposted by Ahmed Hassan
Deconvoluting TCR-dependent & -independent activation is vital for reliable Ag-specific CD4+ T cell characterization by AIM assay https://www.biorxiv.org/content/10.1101/2024.12.10.627643v1
December 14, 2024 at 10:16 AM
Reposted by Ahmed Hassan
The applying of immuno-RCA for the high-sensitivity detection of the ABO blood group antibodies on the printed glycoarray https://www.biorxiv.org/content/10.1101/2024.12.11.625986v1
December 14, 2024 at 10:16 AM
Integrative mapping of human CD8+ T cells in inflammation and cancer

#Immunosky
Integrative mapping of human CD8+ T cells in inflammation and cancer - Nature Methods
scAtlasVAE is a deep learning-based model for cross-atlas integration. Here it enables the development of a large-scale human CD8+ T cell atlas with integrated T cell receptor data.
www.nature.com
December 11, 2024 at 6:00 PM
Reposted by Ahmed Hassan
Really pleased to share collaborative project led by @emilybethwong.bsky.social & 1st author
@maphemthembu.bsky.social

A careful dissection of dysfunctional immune responses in ART-naive HIV infection. TL:DR bronchoalveolar ≠ blood responses
#HIVSky #IDSky #ImmunoSky

www.cell.com/iscience/ful...
Dysfunctional bronchoalveolar effector memory CD8+ T cells in tuberculosis-exposed people living with antiretroviral-naïve HIV infection
Immunology; Virology
www.cell.com
December 5, 2024 at 1:32 PM
MAIT cell plasticity enables functional adaptation that drives antibacterial immune protection
MAIT cell plasticity enables functional adaptation that drives antibacterial immune protection
IL-17A–secreting MAIT17 cells can convert to IFN-γ–producing MAIT1 cells, boosting protection against microbial infection.
www.science.org
December 7, 2024 at 9:18 AM
Reposted by Ahmed Hassan
Transitioning to e-cigarettes restores the immune response to house dust mite in cigarette smoked mice. https://www.biorxiv.org/content/10.1101/2024.12.01.626258v1
December 7, 2024 at 2:15 AM
Reposted by Ahmed Hassan
Vgamma1+ gammadelta T cell-derived IL-4 initiates CD8 T cell immunity https://www.biorxiv.org/content/10.1101/2024.12.06.627130v1
December 7, 2024 at 3:15 AM
Reposted by Ahmed Hassan
Should I go for Single-Cell or Bulk TCR sequencing?

That’s a question often asked by researchers that want to start sequencing their T-cells.

What if you do not need to make that choice anymore? Enter TIRTL-seq from @pgtimmune.bsky.social lab!

www.biorxiv.org/content/10.1...

#Immunosky

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TIRTL-seq: Deep, quantitative, and affordable paired TCR repertoire sequencing
α/β T cells are key players in adaptive immunity. The specificity of T cells is determined by the sequences of the hypervariable T cell receptor (TCR) α and β chains. Although bulk TCR sequencing offe...
www.biorxiv.org
November 20, 2024 at 6:42 AM
Reposted by Ahmed Hassan
Our new work!

We show that T cell cross-reactivity can be reduced without modifying the TCR itself (by dramatically enhancing antigen discrimination).

Generation of T cells with reduced off-target cross-reactivities by engineering co-signalling receptors
www.biorxiv.org/content/10.1...
November 20, 2024 at 9:55 AM
Reposted by Ahmed Hassan
🚀 Advancing T-cell receptor (TCR) research! We developed tcrBLOSUM, a specialized substitution matrix for sensitive alignment of distant epitope-specific TCRs. Find out how our findings expand TCR analysis: doi.org/10.1093/bib/... #Bioinformatics #Immunology #AIRR with @pmeysman.bsky.social
tcrBLOSUM: an amino acid substitution matrix for sensitive alignment of distant epitope-specific TCRs
Abstract. Deciphering the specificity of T-cell receptor (TCR) repertoires is crucial for monitoring adaptive immune responses and developing targeted immu
doi.org
November 26, 2024 at 6:50 PM